Pre_GI: BLASTN Hits

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Query: NC_004547:639726 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 639726, End: 661099, Length: 21374

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013421:70100570100575174450740Pectobacterium wasabiae WPP163, complete genome03576BLASTN svgBLASTP svg
NC_004547:59084459084461116720324Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-74287BLASTN svgBLASTP svg
NC_012912:4194821*4194821421439319573Dickeya zeae Ech1591, complete genome2e-25125BLASTN svgBLASTP svg
NC_012880:4117376*4117376413569218317Dickeya dadantii Ech703, complete genome8e-25123BLASTN svgBLASTP svg
NC_012880:3529017*3529017356582436808Dickeya dadantii Ech703, complete genome5e-20107BLASTN svgBLASTP svg
NC_012214:33039553303955332359919645Erwinia pyrifoliae Ep1/96, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_014121:48950048950052159932100Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete7e-1383.8BLASTN svgBLASTP svg
NC_012214:53700053700055834721348Erwinia pyrifoliae Ep1/96, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015566:34508434508438359938516Serratia sp. AS12 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015567:34650034650038359937100Serratia sp. AS9 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_009832:426993*42699345559928607Serratia proteamaculans 568, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009832:45647524564752461773352982Serratia proteamaculans 568, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_003198:44534574453457450773054274Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-0971.9BLASTN svgBLASTP svg
NC_007954:38874883887488390825720770Shewanella denitrificans OS217, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_012779:34699834699837871931722Edwardsiella ictaluri 93-146, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014228:34421593442159346772325565Xenorhabdus nematophila ATCC 19061, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010102:45570374557037457661219576Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,6e-0763.9BLASTN svgBLASTP svg
NC_014228:33915003391500342834536846Xenorhabdus nematophila ATCC 19061, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009832:4482500*4482500450993127432Serratia proteamaculans 568, complete genome1e-0560BLASTN svgBLASTP svg