Query: NC_004547:639726 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
Start: 639726, End: 661099, Length: 21374
Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_013421:701005 | 701005 | 751744 | 50740 | Pectobacterium wasabiae WPP163, complete genome | 0 | 3576 | BLASTN svg | BLASTP svg |
NC_004547:590844 | 590844 | 611167 | 20324 | Erwinia carotovora subsp. atroseptica SCRI1043, complete genome | 2e-74 | 287 | BLASTN svg | BLASTP svg |
NC_012912:4194821* | 4194821 | 4214393 | 19573 | Dickeya zeae Ech1591, complete genome | 2e-25 | 125 | BLASTN svg | BLASTP svg |
NC_012880:4117376* | 4117376 | 4135692 | 18317 | Dickeya dadantii Ech703, complete genome | 8e-25 | 123 | BLASTN svg | BLASTP svg |
NC_012880:3529017* | 3529017 | 3565824 | 36808 | Dickeya dadantii Ech703, complete genome | 5e-20 | 107 | BLASTN svg | BLASTP svg |
NC_012214:3303955 | 3303955 | 3323599 | 19645 | Erwinia pyrifoliae Ep1/96, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_014121:489500 | 489500 | 521599 | 32100 | Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete | 7e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_012214:537000 | 537000 | 558347 | 21348 | Erwinia pyrifoliae Ep1/96, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_015566:345084 | 345084 | 383599 | 38516 | Serratia sp. AS12 chromosome, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_015567:346500 | 346500 | 383599 | 37100 | Serratia sp. AS9 chromosome, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_009832:426993* | 426993 | 455599 | 28607 | Serratia proteamaculans 568, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_009832:4564752 | 4564752 | 4617733 | 52982 | Serratia proteamaculans 568, complete genome | 4e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_003198:4453457 | 4453457 | 4507730 | 54274 | Salmonella enterica subsp. enterica serovar Typhi str. CT18, | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_007954:3887488 | 3887488 | 3908257 | 20770 | Shewanella denitrificans OS217, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_012779:346998 | 346998 | 378719 | 31722 | Edwardsiella ictaluri 93-146, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_014228:3442159 | 3442159 | 3467723 | 25565 | Xenorhabdus nematophila ATCC 19061, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_010102:4557037 | 4557037 | 4576612 | 19576 | Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7, | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_014228:3391500 | 3391500 | 3428345 | 36846 | Xenorhabdus nematophila ATCC 19061, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_009832:4482500* | 4482500 | 4509931 | 27432 | Serratia proteamaculans 568, complete genome | 1e-05 | 60 | BLASTN svg | BLASTP svg |