Pre_GI Gene

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Host: NC_004547 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:590844 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
590844591731888hypothetical proteinBLASTP
591724592413690hypothetical proteinBLASTP
592410592802393hypothetical proteinBLASTP
5927685941621395replicative DNA helicaseQuickGO ontologyBLASTP
5941625958861725hypothetical proteinBLASTP
595890596162273hypothetical protein
596187596801615hypothetical proteinBLASTP
596810597064255hypothetical proteinBLASTP
5972375984331197hypothetical proteinBLASTP
598803599600798hypothetical proteinBLASTP
5995976016152019DNA topoisomerase IQuickGO ontologyBLASTP
601919602095177hypothetical protein
602138602293156hypothetical protein
602464602955492hypothetical proteinBLASTP
603654604091438putative plasmid-related proteinQuickGO ontologyBLASTP
6042376055531317putative Type IV pilus proteinQuickGO ontologyBLASTP
605553605999447putative Type IV pilus proteinQuickGO ontology
6060136076771665putative Type IV pilus proteinQuickGO ontologyBLASTP
608990609487498putative Type IV pilus proteinQuickGO ontology
6094876110461560putative Type IV pilus nucleotide-binding proteinQuickGO ontologyBLASTP
611015611167153hypothetical protein