Query: NC_004463:5722468 Bradyrhizobium japonicum USDA 110, complete genome
Start: 5722468, End: 5742218, Length: 19751
Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria
General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
| Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
|---|
| NC_004463:8401060 | 8401060 | 8453099 | 52040 | Bradyrhizobium japonicum USDA 110, complete genome | 5e-134 | 486 | BLASTN svg | BLASTP svg |
| NC_004463:2059500 | 2059500 | 2077839 | 18340 | Bradyrhizobium japonicum USDA 110, complete genome | 2e-34 | 155 | BLASTN svg | BLASTP svg |
| NC_004463:7683426 | 7683426 | 7702873 | 19448 | Bradyrhizobium japonicum USDA 110, complete genome | 3e-21 | 111 | BLASTN svg | BLASTP svg |
| NC_009937:4350132 | 4350132 | 4374099 | 23968 | Azorhizobium caulinodans ORS 571, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
| NC_004463:1520303* | 1520303 | 1548020 | 27718 | Bradyrhizobium japonicum USDA 110, complete genome | 6e-13 | 83.8 | BLASTN svg | BLASTP svg |
| NC_011982:130199* | 130199 | 150673 | 20475 | Agrobacterium vitis S4 plasmid pTiS4, complete sequence | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
| NC_002678:4885790 | 4885790 | 4933870 | 48081 | Mesorhizobium loti MAFF303099, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
| NC_004463:5540924 | 5540924 | 5568417 | 27494 | Bradyrhizobium japonicum USDA 110, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_020453:7409402* | 7409402 | 7433301 | 23900 | Agromonas oligotrophica S58 DNA, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
| NC_007778:3784104* | 3784104 | 3814565 | 30462 | Rhodopseudomonas palustris HaA2, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |