Query: NC_001263:132288 Deinococcus radiodurans R1 chromosome 1, complete sequence
Start: 132288, End: 158962, Length: 26675
Host Lineage: Deinococcus radiodurans; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria
General Information: This red-pigmented organism's name means "strange berry that withstands radiation", marking the fact that this organism is one of the most radiation-resistant known. It can tolerate radiation levels at 1000 times the levels that would kill a human and it was originally isolated in 1956 from a can of meat that had been irradiated with X-rays. The resistance to radiation may reflect its resistance to dessication, which also causes DNA damage. This organism may be of use in cleaning up toxic metals found at nuclear weapons production sites due to the radiation resistance. This bacterium is also a highly efficient transformer, and can readily take up exogenous DNA from the environment, which may also aid DNA repair. This organism carries multiple copies of many DNA repair genes, suggesting a robust system for dealing with DNA damage. The recombination system may rely on multiple copies of various repeat elements found throughout the genome.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
| Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
|---|
| NC_015161:523278* | 523278 | 548079 | 24802 | Deinococcus proteolyticus MRP chromosome, complete genome | 0 | 1033 | BLASTN svg | BLASTP svg |
| NC_015161:792955* | 792955 | 817096 | 24142 | Deinococcus proteolyticus MRP chromosome, complete genome | 0 | 1019 | BLASTN svg | BLASTP svg |
| NC_015161:162000* | 162000 | 186012 | 24013 | Deinococcus proteolyticus MRP chromosome, complete genome | 3e-86 | 327 | BLASTN svg | BLASTP svg |
| NC_001263:243000* | 243000 | 267509 | 24510 | Deinococcus radiodurans R1 chromosome 1, complete sequence | 2e-26 | 129 | BLASTN svg | BLASTP svg |
| NC_015161:199666 | 199666 | 221599 | 21934 | Deinococcus proteolyticus MRP chromosome, complete genome | 6e-23 | 117 | BLASTN svg | BLASTP svg |
| NC_008570:1143578 | 1143578 | 1191099 | 47522 | Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome | 4e-18 | 101 | BLASTN svg | BLASTP svg |
| NC_014761:1715377* | 1715377 | 1738234 | 22858 | Oceanithermus profundus DSM 14977 chromosome, complete genome | 4e-15 | 91.7 | BLASTN svg | BLASTP svg |
| NC_014831:65408* | 65408 | 88802 | 23395 | Thermaerobacter marianensis DSM 12885 chromosome, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
| NC_008340:420126* | 420126 | 448654 | 28529 | Alkalilimnicola ehrlichei MLHE-1, complete genome | 9e-13 | 83.8 | BLASTN svg | BLASTP svg |
| NC_005085:2869159* | 2869159 | 2892342 | 23184 | Chromobacterium violaceum ATCC 12472, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
| NC_003888:2814360* | 2814360 | 2858685 | 44326 | Streptomyces coelicolor A3(2), complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
| NC_001263:662666 | 662666 | 689956 | 27291 | Deinococcus radiodurans R1 chromosome 1, complete sequence | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
| NC_012559:1064821 | 1064821 | 1093674 | 28854 | Laribacter hongkongensis HLHK9, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
| NC_019902:2943719 | 2943719 | 2967336 | 23618 | Thioalkalivibrio nitratireducens DSM 14787, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
| NC_019940:203718 | 203718 | 224632 | 20915 | Thioflavicoccus mobilis 8321 chromosome, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
| NC_015556:4074367* | 4074367 | 4105345 | 30979 | Pseudomonas fulva 12-X chromosome, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
| NC_012721:770651* | 770651 | 836813 | 66163 | Burkholderia glumae BGR1 chromosome 2, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
| NC_015690:2553837 | 2553837 | 2575099 | 21263 | Paenibacillus mucilaginosus KNP414 chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_014960:3009500* | 3009500 | 3027199 | 17700 | Anaerolinea thermophila UNI-1, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_008781:3365468* | 3365468 | 3401272 | 35805 | Polaromonas naphthalenivorans CJ2, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_008025:2407618* | 2407618 | 2430330 | 22713 | Deinococcus geothermalis DSM 11300, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_015424:3520783 | 3520783 | 3573908 | 53126 | Aeromonas veronii B565 chromosome, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_021177:2451000* | 2451000 | 2473279 | 22280 | Streptomyces fulvissimus DSM 40593, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_015846:790374* | 790374 | 814245 | 23872 | Capnocytophaga canimorsus Cc5 chromosome, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
| NC_012724:829830 | 829830 | 854581 | 24752 | Burkholderia glumae BGR1 chromosome 1, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
| NC_011146:1699702 | 1699702 | 1719599 | 19898 | Geobacter bemidjiensis Bem, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
| NC_007498:1666242* | 1666242 | 1691843 | 25602 | Pelobacter carbinolicus DSM 2380, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |