Pre_GI: BLASTP Hits

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Query: NC_018080:2288700:2304709 Pseudomonas aeruginosa DK2 chromosome, complete genome

Start: 2304709, End: 2305695, Length: 987

Host Lineage: Pseudomonas aeruginosa; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is an opportunistic human pathogen. While it rarely infects healthy individuals, immunocompromised patients, like burn victims, AIDS-, cancer- or cystic fibrosis-patients are at increased risk for infection with this environmentally versatile bacteria. It is an important soil bacterium with a complex metabolism capable of degrading polycyclic aromatic hydrocarbons, and producing interesting, biologically active secondary metabolites including quinolones, rhamnolipids, lectins, hydrogen cyanide, and phenazines. Production of these products is likely controlled by complex regulatory networks making Pseudomonas aeruginosa adaptable both to free-living and pathogenic lifestyles. The bacterium is naturally resistant to many antibiotics and disinfectants, which makes it a difficult pathogen to treat.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007492:5214709:522843452284345229405972Pseudomonas fluorescens PfO-1, complete genomeHNH endonuclease1e-75283
NC_010571:1334000:133977913397791340618840Opitutus terrae PB90-1, complete genomeHNH endonuclease1e-29130
AC_000091:1191353:121192312119231212756834Escherichia coli W3110 DNA, complete genome5-methylcytosine-specific restriction endonuclease B2e-0963.2
NC_000913:1188999:120956912095691210402834Escherichia coli K12, complete genomee14 prophage; 5-methylcytosine-specific restriction endonuclease B2e-0963.2
NC_012660:5242392:525473652547365255449714Pseudomonas fluorescens SBW25 chromosome, complete genomeputative 5-methylcytosine-specific restriction enzyme7e-0961.6
NC_019974:1184871:1248465124846512498831419Natronococcus occultus SP4, complete genomeputative restriction endonuclease9e-0858.2
NC_010002:3465509:347135734713573472349993Delftia acidovorans SPH-1, complete genomeHNH endonuclease8e-0858.2
NC_014965:2200974:221588722158872216594708Vibrio vulnificus MO6-24/O chromosome I, complete sequenceHNH endonuclease3e-0756.6
NC_006138:2288261:231215223121522312865714Desulfotalea psychrophila LSv54, complete genome5-methylcytosine-specific restriction enzyme A2e-0653.9
NC_017098:986428:995168995168995860693Spirochaeta africana DSM 8902 chromosome, complete genomeputative restriction endonuclease2e-0653.5
NC_008826:13393:283812838129043663Methylibium petroleiphilum PM1 plasmid RPME01, complete sequencehypothetical protein6e-0652
NC_011146:3206000:321961232196123220313702Geobacter bemidjiensis Bem, complete genomeHNH endonuclease7e-0652