Pre_GI: BLASTP Hits

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Query: NC_017328:3655876:3678379 Shigella flexneri 2002017 chromosome, complete genome

Start: 3678379, End: 3679392, Length: 1014

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:3590323:3643522364352236445351014Shigella flexneri 2a str. 301, complete genomehypothetical protein0690
NC_004337:3621985:3643522364352236445351014Shigella flexneri 2a str. 301, complete genomehypothetical protein0690
NC_012214:124337:1285711285711295931023Erwinia pyrifoliae Ep1/96, complete genomePredicted membrane protein1e-127456
NC_014228:4360676:436528343652834366260978Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein8e-110397
NC_021064:1211480:1229279122927912304991221Propionibacterium avidum 44067, complete genomeputative tRNA-processing ribonuclease1e-27124
NC_009921:7249249:7269782726978272709541173Frankia sp. EAN1pec, complete genomeribonuclease BN4e-25115
NC_014616:213118:218980218980219939960Bifidobacterium bifidum S17 chromosome, complete genomeribonuclease BN-like family4e-0652.8
NC_014638:183115:189043189043189963921Bifidobacterium bifidum PRL2010 chromosome, complete genomeribonuclease BN5e-0652.4