Pre_GI: BLASTP Hits

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Query: NC_017328:2090679:2091971 Shigella flexneri 2002017 chromosome, complete genome

Start: 2091971, End: 2092180, Length: 210

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008258:2045000:204503720450372045246210Shigella flexneri 5 str. 8401, complete genomeputative outer membrane protein4e-33139
NC_004741:2009769:201304720130472013256210Shigella flexneri 2a str. 2457T, complete genomeputative outer membrane protein4e-33139
NC_008253:1938975:1938975193897519400331059Escherichia coli 536, complete genomeputative outer membrane pore protein4e-28123
NC_004431:2185750:2185750218575021868771128Escherichia coli CFT073, complete genomeOuter membrane protein N precursor5e-28122
NC_011740:1991941:1995018199501819960731056Escherichia fergusonii ATCC 35469, complete genomeOuter membrane protein N precursor (porin)5e-27119
NC_008563:2041345:2041345204134520424901146Escherichia coli APEC O1, complete genomeOuter membrane protein N precursor3e-1787.4
CP002516:1902431:1919201191920119203161116Escherichia coli KO11, complete genomeporin Gram-negative type3e-1787.4
CP002185:2181936:2185539218553921866541116Escherichia coli W, complete genome3e-1787.4
NC_016902:1902431:1919201191920119203161116Escherichia coli KO11FL chromosome, complete genomeporin3e-1787.4
NC_013353:2272919:2273321227332122743941074Escherichia coli O103:H2 str. 12009, complete genomeouter membrane porin protein4e-1787
NC_009801:2159123:2163636216363621647091074Escherichia coli E24377A, complete genomeouter membrane protein homolog4e-1787
AP010958:2272919:2273321227332122743941074Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted outer membrane porin protein4e-1787
NC_007613:1038000:105747910574791057976498Shigella boydii Sb227, complete genomeputative outer membrane porin protein C precurser9e-1785.5
NC_016612:5208936:5214784521478452158541071Klebsiella oxytoca KCTC 1686 chromosome, complete genomeporin2e-1374.3
NC_013971:2408522:2436647243664724377531107Erwinia amylovora ATCC 49946 chromosome, complete genomeouter membrane protein C6e-1372.8
NC_013961:2370994:2399119239911924002251107Erwinia amylovora, complete genomeOuter membrane protein 1B precursor6e-1372.8
NC_011294:2334979:2359510235951023606461137Salmonella enterica subsp. enterica serovar Enteritidis strouter membrane porin protein C1e-1272
NC_011274:2325840:235037923503792351347969Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91outer membrane protein C1e-1271.6
NC_021066:601029:6145096145096155791071Raoultella ornithinolytica B6, complete genomeouter membrane protein F1e-1271.6
NC_013941:699286:7138747138747149561083Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeouter membrane porin protein C2e-1270.9
CU928145:824367:8366178366178376991083Escherichia coli 55989 chromosome, complete genomeouter membrane porin; DLP12 prophage4e-1270.1
NC_011748:824367:8366178366178376991083Escherichia coli 55989, complete genomeouter membrane porin; DLP12 prophage4e-1270.1
NC_015566:3659318:3676851367685136779691119Serratia sp. AS12 chromosome, complete genomeporin4e-1270.1
NC_011740:1991941:1996644199664419977471104Escherichia fergusonii ATCC 35469, complete genomeouter membrane porin; DLP12 prophage5e-1166.6
NC_011751:643976:6614176614176624991083Escherichia coli UMN026 chromosome, complete genomeputative outer membrane porin1e-1065.1
NC_008563:1175035:1193929119392911950711143Escherichia coli APEC O1, complete genomeouter membrane porin protein NmpC precursor1e-1065.1
NC_007946:1239278:1256542125654212576841143Escherichia coli UTI89, complete genomeouter membrane porin protein NmpC precursor1e-1065.1
NC_011415:2153243:2153243215324321543251083Escherichia coli SE11 chromosome, complete genomeputative outer membrane porin protein1e-1065.1
NC_011742:1177946:1197451119745111985931143Escherichia coli S88 chromosome, complete genomeouter membrane porin1e-1065.1
NC_004431:1401681:1420007142000714211491143Escherichia coli CFT073, complete genomeOuter membrane porin protein nmpC precursor1e-1065.1
NC_007606:1515403:152571215257121526020309Shigella dysenteriae Sd197, complete genomehypothetical protein1e-1065.1
NC_017328:1835108:1844591184459118456911101Shigella flexneri 2002017 chromosome, complete genomeputative outer membrane porin protein2e-1064.7
NC_004741:1823000:1828994182899418300941101Shigella flexneri 2a str. 2457T, complete genomeputative outer membrane porin protein2e-1064.7
NC_008258:1784637:1791372179137217924721101Shigella flexneri 5 str. 8401, complete genomeputative outer membrane porin protein2e-1064.7
NC_013941:1857724:1870815187081518719151101Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeGram-negative porin family2e-1064.3
NC_013008:1971662:1979927197992719810271101Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeouter membrane porin protein2e-1064.3
NC_011353:1971145:1980951198095119820511101Escherichia coli O157:H7 str. EC4115 chromosome, complete genomegram-negative porin family protein2e-1064.3
NC_002655:2015000:2021022202102220221221101Escherichia coli O157:H7 EDL933, complete genomeputative outer membrane porin protein2e-1064.3
NC_002695:2056545:2066351206635120674511101Escherichia coli O157:H7 str. Sakai, complete genomeputaive outer membrane porin protein2e-1064.3
NC_011750:1809943:1822110182211018232101101Escherichia coli IAI39 chromosome, complete genomeouter membrane porin protein ompD2e-1064.3
NC_010498:1210145:1224155122415512253181164Escherichia coli SMS-3-5, complete genomeporin family protein2e-1064.3
NC_010498:1700447:1705762170576217068621101Escherichia coli SMS-3-5, complete genomeporin family protein2e-1064.3
NC_011415:2248417:2252020225202022531831164Escherichia coli SE11 chromosome, complete genomeputative porin2e-1064.3
NC_013364:2522888:2526040252604025272031164Escherichia coli O111:H- str. 11128, complete genomeputative outer membrane pore protein2e-1064.3
NC_007384:1737885:1745537174553717466371101Shigella sonnei Ss046, complete genomeputative outer membrane porin protein2e-1064.3
NC_016822:1818897:1824859182485918259591101Shigella sonnei 53G, complete genomeouter membrane porin protein2e-1064.3
NC_015663:4906652:4912147491214749132891143Enterobacter aerogenes KCTC 2190 chromosome, complete genomeouter membrane pore protein S12e-1064.3
NC_013716:2139952:2145537214553721467121176Citrobacter rodentium ICC168, complete genomeOuter membrane porin protein3e-1063.9
NC_013361:1896446:1918777191877719199101134Escherichia coli O26:H11 str. 11368 chromosome, complete genomeouter membrane pore protein N4e-1063.5
NC_008563:1505405:1522248152224815233811134Escherichia coli APEC O1, complete genomeouter membrane pore protein N, non-specific4e-1063.5
NC_012947:2366000:2369930236993023710631134Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeporin Gram-negative type4e-1063.5
NC_016822:2201388:221146522114652211830366Shigella sonnei 53G, complete genomeputative outer membrane pore protein4e-1063.5
NC_000913:2028472:203286320328632033267405Escherichia coli K12, complete genome4e-1063.5
NC_004337:1783645:1792048179204817931481101Shigella flexneri 2a str. 301, complete genomeputative outer membrane porin protein5e-1063.2
NC_009800:2049346:205414120541412054344204Escherichia coli HS, complete genomeouter membrane protein, truncation2e-0961.6
NC_002655:2730659:273442127344212734996576Escherichia coli O157:H7 EDL933, complete genomeputative outer membrane protein2e-0961.6
NC_013941:2425233:2428383242838324295701188Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-0961.6
NC_011274:1129686:1153689115368911548851197Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91outer membrane protein S11e-0961.6
CU928160:2091249:2095731209573120969481218Escherichia coli IAI1 chromosome, complete genomePorin OmpN1e-0961.6
NC_011741:2091249:2095731209573120969481218Escherichia coli IAI1 chromosome, complete genomePorin OmpN1e-0961.6
NC_011149:1110642:1126504112650411277151212Salmonella enterica subsp. enterica serovar Agona str. SL483,outer membrane protein N1e-0961.6
NC_016810:2027311:2035137203513720363331197Salmonella enterica subsp. enterica serovar Typhimurium strouter membrane protein S11e-0961.6
NC_016856:2085283:2088974208897420901701197Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative porin1e-0961.6
NC_016857:2027311:2035137203513720363331197Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative porin1e-0961.6
NC_016863:2029340:2037166203716620383621197Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative porin1e-0961.6
NC_017046:2026672:2034498203449820356941197Salmonella enterica subsp. enterica serovar Typhimurium str. 798outer membrane protein S11e-0961.6
NC_011205:1227373:124031812403181240716399Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853outer membrane protein N1e-0961.6
NC_014121:2745097:2764515276451527655701056Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeOmpF porin2e-0961.2
NC_004631:948054:9841259841259853091185Salmonella enterica subsp. enterica serovar Typhi Ty2, completeouter membrane protein S12e-0961.2
NC_016832:948029:9818009818009829841185Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Outer membrane porin protein ompD2e-0961.2
NC_015761:1970042:1977884197788419790741191Salmonella bongori NCTC 12419, complete genomeouter membrane protein S12e-0961.2
NC_002695:2655445:265920726592072659782576Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-0961.2
NC_011353:2563056:256681825668182567393576Escherichia coli O157:H7 str. EC4115 chromosome, complete genome2e-0961.2
NC_013008:2561586:256579925657992566374576Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeouter membrane protein2e-0961.2
NC_016514:2476359:2480816248081624819251110Enterobacter cloacae EcWSU1 chromosome, complete genomeouter membrane protein N3e-0960.8
NC_011283:1901229:1915691191569119168361146Klebsiella pneumoniae 342 chromosome, complete genomeporin3e-0960.8
NC_016831:1865681:1870280187028018714761197Salmonella enterica subsp. enterica serovar Gallinarum/pullorumouter membrane protein S13e-0960.8
NC_015061:2770856:2785809278580927869211113Rahnella sp. Y9602 chromosome, complete genomeporin Gram-negative type2e-0960.8
NC_014121:1848971:1862509186250918636181110Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeouter membrane pore protein N, non-specific4e-0960.1
NC_020064:1409596:1409596140959614106931098Serratia marcescens FGI94, complete genomeouter membrane protein (porin)1e-0858.9
NC_013282:923500:9260759260759271601086Cronobacter turicensis, complete genomeOuter membrane pore protein E1e-0858.9
NC_013716:1756545:1760425176042517615581134Citrobacter rodentium ICC168, complete genomeouter membrane protein N (porin)9e-0958.9
NC_016612:4119410:4119410411941041205161107Klebsiella oxytoca KCTC 1686 chromosome, complete genomeouter membrane pore protein N, non-specific8e-0958.9
NC_020063:2449554:2453423245342324545921170Enterobacteriaceae bacterium strain FGI 57, complete genomeouter membrane protein (porin)1e-0858.5
NC_017328:303987:3057293057293067841056Shigella flexneri 2002017 chromosome, complete genomeOuter membrane pore protein E5e-0856.6
NC_016832:2581145:2602679260267926037311053Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Outer membrane pore protein E9e-0855.8
NC_006905:368942:3689423689423699941053Salmonella enterica subsp. enterica serovar Choleraesuis strouter membrane pore protein e (e,ic,nmpab)8e-0855.8
NC_016856:365665:3656653656653667171053Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Souter membrane phosphoporin protein E8e-0855.8
NC_016860:364981:3649813649813660331053Salmonella enterica subsp. enterica serovar Typhimurium strouter membrane porin E8e-0855.8
NC_015062:58826:647326473265292561Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence8e-0855.8
NC_014618:3700640:3715169371516937162661098Enterobacter cloacae SCF1 chromosome, complete genomeporin7e-0855.8
NC_009648:293052:3200013200013210291029Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeouter membrane phosphoporin protein E1e-0755.5
NC_011283:4438500:4441282444128244423341053Klebsiella pneumoniae 342 chromosome, complete genomeouter membrane phosphoporin protein E1e-0755.5
NC_012731:1088321:1105013110501311060651053Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeouter membrane phosphoporin protein E1e-0755.5
NC_013361:313540:3175503175503186051056Escherichia coli O26:H11 str. 11368 chromosome, complete genomeouter membrane phosphoporin protein E1e-0755.5
NC_017060:59500:648716487165473603Rahnella aquatilis HX2 plasmid PRA1, complete sequenceouter membrane pore protein N, non-specific1e-0755.5
NC_010498:301000:3028133028133038681056Escherichia coli SMS-3-5, complete genomeouter membrane pore protein E1e-0755.5
NC_007384:307013:3110233110233120781056Shigella sonnei Ss046, complete genomeouter membrane pore protein E (E,Ic,NmpAB)1e-0755.5
NC_011745:291422:2931642931642942191056Escherichia coli ED1a chromosome, complete genomeouter membrane phosphoporin protein E1e-0755.1
NC_007946:289425:2912382912382922991062Escherichia coli UTI89, complete genomeouter membrane pore protein E precursor1e-0755.1
NC_008563:287136:2912172912172922781062Escherichia coli APEC O1, complete genomeouter membrane pore protein E precursor1e-0755.1
NC_004431:364000:3663973663973674581062Escherichia coli CFT073, complete genomeOuter membrane pore protein E precursor1e-0755.1
NC_011742:291237:2912372912372922921056Escherichia coli S88 chromosome, complete genomeouter membrane phosphoporin protein E1e-0755.1
NC_014500:2934232:2942238294223829433411104Dickeya dadantii 3937 chromosome, complete genomeouter membrane porin 1a (Ia;b;F)2e-0754.7
NC_021066:3028421:3030950303095030320021053Raoultella ornithinolytica B6, complete genomeouter membrane phosphoporin protein E3e-0753.9
NC_020063:3690308:3744533374453337455971065Enterobacteriaceae bacterium strain FGI 57, complete genomeouter membrane protein (porin)4e-0753.5
NC_016514:891772:8958698958698969211053Enterobacter cloacae EcWSU1 chromosome, complete genomeouter membrane pore protein E8e-0752.4
NC_014121:1101093:1103964110396411050161053Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeouter membrane phosphoporin protein E9e-0752.4
NC_013716:357928:3596823596823607341053Citrobacter rodentium ICC168, complete genomeouter membrane pore protein E2e-0651.2
NC_010473:498252:5130845130845153802297Escherichia coli str. K-12 substr. DH10B, complete genome4e-0650.4