Pre_GI: BLASTP Hits

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Query: NC_017319:155958:160516 Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence

Start: 160516, End: 161475, Length: 960

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004851:157675:161854161854162813960Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceplasmid stable inheritance protein0659
NC_007941:11319:531865318654157972Escherichia coli UTI89 plasmid pUTI89, complete sequencestable plasmid inheritance protein1e-83310
NC_009787:17344:208332083321813981Escherichia coli E24377A plasmid pETEC_35, complete sequenceplasmid segregation protein ParM1e-60233
NC_007484:667879:6710776710776721681092Nitrosococcus oceani ATCC 19707, complete genomehypothetical protein3e-0963.2