Pre_GI: BLASTP Hits

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Query: NC_017179:805867:831206 Clostridium difficile BI1, complete genome

Start: 831206, End: 832144, Length: 939

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:796313:821640821640822590951Clostridium difficile CD196 chromosome, complete genomeradical SAM protein0632
NC_013316:796895:819180819180820130951Clostridium difficile R20291, complete genomeputative radical SAM superfamily protein0632
NC_009089:873295:895604895604896542939Clostridium difficile 630, complete genomeputative radical SAM superfamily protein4e-179627
NC_019942:68031:847508475085682933Aciduliprofundum sp. MAR08-339, complete genomebiotin synthase-related enzyme5e-56218
NC_003413:128228:153721153721154650930Pyrococcus furiosus DSM 3638, complete genomehypothetical protein2e-49196
NC_000868:196015:222199222199223107909Pyrococcus abyssi GE5, complete genomehypothetical biotin synthase9e-49194
NC_014804:803510:825642825642826598957Thermococcus barophilus MP chromosome, complete genomehypothetical protein8e-47187
NC_015474:644552:671417671417672349933Pyrococcus sp. NA2 chromosome, complete genomehypothetical protein8e-46184
NC_016584:4478200:4479871447987144809531083Desulfosporosinus orientis DSM 765 chromosome, complete genomebiotin synthase-related enzyme2e-31136
NC_014160:719408:743991743991744926936Thermosphaera aggregans DSM 11486 chromosome, complete genomeradical SAM domain-containing protein2e-30133
NC_012622:1010210:1032423103242310334781056Sulfolobus islandicus Y.G.57.14 chromosome, complete genomeradical SAM protein1e-29130
NC_003106:1175000:119648511964851197312828Sulfolobus tokodaii str. 7, complete genomehypothetical protein5e-29128
NC_015518:1518047:1517007151700715180501044Acidianus hospitalis W1 chromosome, complete genomeRadical SAM domain-containing protein1e-28127
NC_018870:1953748:1976280197628019773231044Thermacetogenium phaeum DSM 12270 chromosome, complete genomeradical SAM domain-containing protein6e-27121
NC_003106:1879441:1894926189492618959841059Sulfolobus tokodaii str. 7, complete genomehypothetical protein5e-26118
NC_000918:1353310:1376132137613213772501119Aquifex aeolicus VF5, complete genomehypothetical protein6e-2098.2
NC_013790:2690740:270822827082282709208981Methanobrevibacter ruminantium M1 chromosome, complete genomebiotin synthase BioB16e-0755.1
NC_013009:532000:549509549509550486978Neorickettsia risticii str. Illinois, complete genomebiotin synthase1e-0654.3
NC_015510:6653159:6672470667247066735671098Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeBiotin synthase1e-0654.3