Pre_GI: BLASTP Hits

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Query: NC_017179:805867:823402 Clostridium difficile BI1, complete genome

Start: 823402, End: 824769, Length: 1368

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:796313:8138488138488152151368Clostridium difficile CD196 chromosome, complete genomeacetyl-CoA decarbonylase/synthase complex subunit gamma0930
NC_009089:873295:8878008878008891671368Clostridium difficile 630, complete genomeputative carbon monoxide dehydrogenase/acetyl-CoA synthase complex, alpha subunit0930
NC_013316:796895:8113888113888127551368Clostridium difficile R20291, complete genomeputative carbon monoxide dehydrogenase/acetyl-CoA synthase complex, alpha subunit0930
NC_014614:1309203:1326049132604913274041356Clostridium sticklandii, complete genomeCorrinoid-iron-sulfur protein; large subunit5e-176617
NC_014328:4073714:4080813408081340821651353Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeCO dehydrogenase/acetyl-CoA synthase subunit gamma1e-174613
NC_015519:586000:6003856003856017491365Tepidanaerobacter sp. Re1 chromosome, complete genomeCO dehydrogenase/acetyl-CoA synthase subunit delta2e-141502
NC_015682:379373:3844573844573868472391Thermodesulfobacterium sp. OPB45 chromosome, complete genomeCO dehydrogenase/acetyl-CoA synthase subunit delta, TIM barrel1e-103377
NC_009975:1565865:1578099157809915794721374Methanococcus maripaludis C6, complete genomeCO dehydrogenase/acetyl-CoA synthase delta subunit2e-77290
NC_005791:961500:9648099648099661821374Methanococcus maripaludis S2, complete genomeacetyl-CoA decarbonylase/synthase complex subunit gamma3e-77289
NC_009634:349204:3559093559093572821374Methanococcus vannielii SB chromosome, complete genomeacetyl-CoA decarbonylase/synthase complex subunit gamma1e-75283
NC_009712:1185301:1206501120650112078351335Candidatus Methanoregula boonei 6A8, complete genomeacetyl-CoA decarbonylase/synthase complex subunit gamma5e-71268
NC_015562:1081826:1081826108182610833071482Methanotorris igneus Kol 5 chromosome, complete genomeCO dehydrogenase/acetyl-CoA synthase subunit delta4e-70265
NC_015574:2021300:2024248202424820256271380Methanobacterium sp. SWAN-1 chromosome, complete genomeCO dehydrogenase/acetyl-CoA synthase subunit delta, TIM barrel3e-68259
NC_013849:627811:6407916407916422061416Ferroglobus placidus DSM 10642 chromosome, complete genomeCO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel3e-67256
NC_015216:434752:4484004484004497881389Methanobacterium sp. AL-21 chromosome, complete genomeCO dehydrogenase/acetyl-CoA synthase subunit delta, TiM barrel2e-65250
NC_015320:967701:9800269800269814261401Archaeoglobus veneficus SNP6 chromosome, complete genomeCO dehydrogenase/acetyl-CoA synthase subunit delta, TIM barrel7e-65248
NC_014002:1173561:1185080118508011864921413Methanohalophilus mahii DSM 5219 chromosome, complete genomeacetyl-CoA decarbonylase/synthase gamma subunit5e-59228
NC_007355:499764:5203485203485217571410Methanosarcina barkeri str. fusaro chromosome 1, complete sequenceacetyl-CoA decarbonylase/synthase complex subunit gamma6e-57221
NC_018876:2760000:2766465276646527678741410Methanolobus psychrophilus R15 chromosome, complete genomeacetyl-CoA decarbonylase/synthase complex subunit gamma5e-55215
NC_003901:2479613:2483969248396924853811413Methanosarcina mazei Go1, complete genomeacetyl-CoA decarbonylase/synthase complex subunit gamma2e-54213
NC_003901:815389:8267758267758281871413Methanosarcina mazei Go1, complete genomeacetyl-CoA decarbonylase/synthase complex subunit gamma3e-54213
NC_003552:4714457:4749062474906247504681407Methanosarcina acetivorans C2A, complete genomeacetyl-CoA decarbonylase/synthase complex subunit gamma2e-53210
NC_003552:1202909:1206107120610712075131407Methanosarcina acetivorans C2A, complete genomeacetyl-CoA decarbonylase/synthase complex subunit gamma2e-53210
NC_013849:627811:631803631803632273471Ferroglobus placidus DSM 10642 chromosome, complete genomeFe-S cluster domain protein8e-0652