Pre_GI: BLASTP Hits

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Query: NC_017179:1683199:1686617 Clostridium difficile BI1, complete genome

Start: 1686617, End: 1687123, Length: 507

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009253:529494:536291536291536731441Desulfotomaculum reducens MI-1 chromosome, complete genomehypothetical protein1e-1168.9
NC_018704:176088:190651190651191124474Amphibacillus xylanus NBRC 15112, complete genomehypothetical protein1e-0652.4
NC_013766:1293144:129314412931441293596453Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein3e-0651.2
NC_014551:865254:871273871273871737465Bacillus amyloliquefaciens DSM 7, complete genomehypothetical protein6e-0650.1
NC_020134:420500:423808423808424278471Clostridium stercorarium subsp. stercorarium DSM 8532, completephage protein7e-0650.1