Pre_GI: BLASTP Hits

Some Help

Query: NC_017177:192933:196779 Clostridium difficile BI1, complete genome

Start: 196779, End: 198140, Length: 1362

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013173:1437464:1453313145331314543501038Desulfomicrobium baculatum DSM 4028, complete genomehypothetical protein1e-34147
NC_014218:1619982:1637121163712116384281308Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomehypothetical protein5e-24112
NC_011662:2320100:2357815235781523591191305Thauera sp. MZ1T, complete genomehypothetical protein6e-22105
NC_006138:225832:2575292575292588151287Desulfotalea psychrophila LSv54, complete genomehypothetical protein3e-21103
NC_013716:5201097:5267206526720652685341329Citrobacter rodentium ICC168, complete genomehypothetical protein3e-20100
NC_011294:2053991:2083802208380220850731272Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein3e-2099.8
NC_011205:2180598:2210817221081722120881272Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein3e-2099.8
NC_007575:973559:9854939854939867641272Sulfurimonas denitrificans DSM 1251, complete genomehypothetical protein5e-2099.4
NC_016831:947281:9583819583819596521272Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein6e-2099
NC_011742:4655373:4667904466790446692321329Escherichia coli S88 chromosome, complete genomehypothetical protein7e-2099
NC_004431:4270305:4294419429441942957471329Escherichia coli CFT073, complete genomehypothetical protein7e-2099
NC_008563:4739333:4753242475324247545701329Escherichia coli APEC O1, complete genomehypothetical protein7e-2099
NC_011274:2044000:2074930207493020762011272Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein8e-2098.6
NC_006322:4149500:4159086415908641604381353Bacillus licheniformis ATCC 14580, complete genomehypothetical protein3e-1790.1
NC_006270:4149004:4158971415897141603231353Bacillus licheniformis ATCC 14580, complete genomeputative nucleotidyltransferase3e-1790.1
NC_007164:622000:6306016306016318901290Corynebacterium jeikeium K411, complete genomehypothetical protein9e-1788.6
NC_018679:3843870:3854975385497538562461272Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completehypothetical protein8e-1375.5
NC_008573:195317:2343732343732359051533Shewanella sp. ANA-3 plasmid 1, complete sequencehypothetical protein7e-1168.9
NC_017068:1788235:180638318063831807231849Selenomonas ruminantium subsp. lactilytica TAM6421, completehypothetical protein8e-1168.9
NC_016609:7427500:7454292745429274553291038Niastella koreensis GR20-10 chromosome, complete genomehypothetical protein1e-1067.8
NC_015660:1896904:1900808190080819018481041Geobacillus thermoglucosidasius C56-YS93 chromosome, completehypothetical protein1e-0965.1
NC_014650:1862165:1875867187586718769071041Geobacillus sp. Y4.1MC1 chromosome, complete genomehypothetical protein1e-0965.1
NC_013921:1915377:1919421191942119204611041Thermoanaerobacter italicus Ab9 chromosome, complete genomehypothetical protein2e-0860.8
NC_010334:2131939:2142667214266721437041038Shewanella halifaxensis HAW-EB4, complete genomehypothetical protein4e-0859.7
NC_007760:3655433:3679812367981236812691458Anaeromyxobacter dehalogenans 2CP-C, complete genomehypothetical protein9e-0858.5
NC_008573:195317:2406772406772417081032Shewanella sp. ANA-3 plasmid 1, complete sequencehypothetical protein5e-0756.2
NC_020418:1841138:1846901184690118479711071Morganella morganii subsp. morganii KT, complete genomehypothetical protein2e-0653.9
NC_010634:4463727:4476084447608444771241041Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein8e-0652.4