Pre_GI: BLASTP Hits

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Query: NC_017177:175000:191049 Clostridium difficile BI1, complete genome

Start: 191049, End: 192008, Length: 960

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020409:512861:5202845202845213121029Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeMetal dependent phosphohydrolase5e-1685.5
NC_016012:16134:209632096321931969Candidatus Arthromitus sp. SFB-rat-Yit, complete genome3'-5' exoribonuclease YhaM6e-1478.2
NC_014836:1108919:1110033111003311111601128Desulfurispirillum indicum S5 chromosome, complete genomemetal dependent phosphohydrolase2e-0963.5
NC_014624:171394:177900177900178844945Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein4e-0962.8
NC_013411:1454465:1480311148031114814411131Geobacillus sp. Y412MC61, complete genomemetal dependent phosphohydrolase2e-0860.1
NC_014915:595569:620255620255621232978Geobacillus sp. Y412MC52 chromosome, complete genomemetal dependent phosphohydrolase3e-0859.7
NC_015425:369225:376392376392377366975Clostridium botulinum BKT015925 chromosome, complete genomeHD domain-containing protein2e-0757
NC_009943:1364536:139000513900051390967963Candidatus Desulfococcus oleovorans Hxd3, complete genomemetal dependent phosphohydrolase2e-0756.6
NC_015573:2323268:234095223409522341893942Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomemetal dependent phosphohydrolase4e-0755.8
NC_014220:70490:7198871988730041017Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomemetal dependent phosphohydrolase8e-0651.6