Pre_GI: BLASTP Hits

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Query: NC_016822:3420826:3434031 Shigella sonnei 53G, complete genome

Start: 3434031, End: 3434612, Length: 582

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
CU928145:4792703:479573947957394796488750Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein1e-78292
NC_011748:4792703:479573947957394796488750Escherichia coli 55989, complete genomehypothetical protein1e-78292
NC_017328:3088907:310413131041313104871741Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-78291
NC_004337:3049118:306422530642253064923699Shigella flexneri 2a str. 301, complete genomehypothetical protein4e-78290
NC_011751:3453683:347883334788333479582750Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-77287
NC_004431:3409389:345573434557343456432699Escherichia coli CFT073, complete genomehypothetical protein2e-76284
CP002797:4603787:461845346184534618566114Escherichia coli NA114, complete genomeHypothetical protein3e-0651.6