Pre_GI: BLASTP Hits

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Query: NC_016822:2940000:2945015 Shigella sonnei 53G, complete genome

Start: 2945015, End: 2945605, Length: 591

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011747:86000:887608876089350591Escherichia coli S88 plasmid pECOS88, complete sequenceconserved hypothetical protein YdeA3e-93340
NC_009788:16360:190971909719687591Escherichia coli E24377A plasmid pETEC_73, complete sequencehypothetical protein1e-88325
NC_007941:11319:172951729517804510Escherichia coli UTI89 plasmid pUTI89, complete sequencehypothetical protein1e-84311
NC_009790:42112:587335873359263531Escherichia coli E24377A plasmid pETEC_74, complete sequencehypothetical protein3e-70264
NC_015567:346500:357161357161357934774Serratia sp. AS9 chromosome, complete genomehypothetical protein4e-1477.8
NC_015566:345084:356996356996357769774Serratia sp. AS12 chromosome, complete genomehypothetical protein4e-1477.8