Pre_GI: BLASTP Hits

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Query: NC_016822:1431200:1482812 Shigella sonnei 53G, complete genome

Start: 1482812, End: 1483696, Length: 885

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014121:2514544:251984325198432520727885Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completealdose 1-epimerase4e-129460
NC_015566:2957956:296012929601292961004876Serratia sp. AS12 chromosome, complete genomeAldose 1-epimerase1e-96352
NC_017047:2260118:228732622873262288105780Rahnella aquatilis HX2 chromosome, complete genomealdose 1-epimerase5e-84311
NC_016745:3199934:321774732177473218517771Oceanimonas sp. GK1 chromosome, complete genomealdose 1-epimerase1e-47190
NC_016602:2586044:259238125923812593265885Vibrio furnissii NCTC 11218 chromosome 1, complete sequencealdose 1-epimerase1e-45183
NC_013416:1588369:161137016113701612188819Aggregatibacter actinomycetemcomitans D11S-1, complete genomealdose 1-epimerase9e-38157
NC_016513:1924242:194729719472971948115819Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completealdose 1-epimerase6e-38157
NC_004757:1089057:109204710920471092952906Nitrosomonas europaea ATCC 19718, complete genomeAldose 1-epimerase6e-37154
NC_011901:2739984:275087727508772751791915Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completealdose 1-epimerase4e-34145
NC_003919:5056650:5077186507718650793482163Xanthomonas axonopodis pv. citri str. 306, complete genomeepimerase2e-33142
NC_015563:1240978:124635412463541247256903Delftia sp. Cs1-4 chromosome, complete genomeAldose 1-epimerase3e-27122
NC_009439:1297851:130123313012331302129897Pseudomonas mendocina ymp, complete genomealdose 1-epimerase3e-2099.4
NC_011992:571000:576716576716577543828Acidovorax ebreus TPSY, complete genomeAldose 1-epimerase5e-1375.5
NC_007516:124486:158678158678159532855Synechococcus sp. CC9605, complete genomehypothetical protein3e-1272.8
NC_008820:2268900:228627222862722287138867Prochlorococcus marinus str. MIT 9303, complete genomeGalactose mutarotase7e-1168.2
NC_007434:1809946:1833085183308518342001116Burkholderia pseudomallei 1710b chromosome I, complete sequenceAldose 1-epimerase subfamily, putative2e-0963.5
NC_009074:1470689:147428714742871475195909Burkholderia pseudomallei 668 chromosome I, complete sequencealdose 1-epimerase subfamily2e-0963.2
NC_007651:3064530:3162206316220631634051200Burkholderia thailandensis E264 chromosome I, complete sequenceAldose 1-epimerase family2e-0756.6
NC_008390:1293823:131790813179081318870963Burkholderia cepacia AMMD chromosome 1, complete sequenceAldose 1-epimerase4e-0755.5
NC_010804:1334581:133739213373921338306915Burkholderia multivorans ATCC 17616 chromosome 1, completeputative aldose 1-epimerase6e-0755.1
NC_010084:2171881:218646721864672187381915Burkholderia multivorans ATCC 17616 chromosome 1, completealdose 1-epimerase6e-0755.1
NC_011000:1397611:140042414004241401335912Burkholderia cenocepacia J2315 chromosome 1, complete sequencealdose 1-epimerase1e-0654.3
NC_012724:1308000:130821713082171309125909Burkholderia glumae BGR1 chromosome 1, complete genomeAldose 1-epimerase4e-0652.4
NC_014307:1619000:163706816370681638006939Ralstonia solanacearum CFBP2957 chromosome, complete genomealdose epimerase or galactose mutarotase5e-0652
NC_015381:1558263:156119015611901562098909Burkholderia gladioli BSR3 chromosome 1, complete sequencealdose 1-epimerase5e-0652
NC_009256:1365500:138116613811661382080915Burkholderia vietnamiensis G4 chromosome 1, complete sequencealdose 1-epimerase6e-0651.6