Pre_GI: BLASTP Hits

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Query: NC_016822:1431200:1449666 Shigella sonnei 53G, complete genome

Start: 1449666, End: 1449974, Length: 309

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:1239904:124650212465021247209708Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein8e-1785.5
NC_006511:1243817:125265912526591253366708Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein8e-1785.5
NC_014121:4299500:431354843135484313928381Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein5e-1373.2
NC_013971:1660144:170306917030691703749681Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein5e-1063.2
NC_013961:1622616:166554216655421666222681Erwinia amylovora, complete genomeUncharacterized protein yhjH5e-1063.2
NC_009778:2227627:226306322630632263737675Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein7e-1062.8
NC_012214:2221702:222526222252622225993732Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein7e-1062.8