Pre_GI: BLASTP Hits

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Query: NC_016822:1339058:1348018 Shigella sonnei 53G, complete genome

Start: 1348018, End: 1349886, Length: 1869

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:1355060:1365170136517013670381869Shigella sonnei Ss046, complete genomehypothetical protein01308
NC_013361:2591829:2611361261136126132291869Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein01306
NC_013364:2355298:2374830237483023766981869Escherichia coli O111:H- str. 11128, complete genomehypothetical protein01301
NC_011741:1978500:1998063199806319999311869Escherichia coli IAI1 chromosome, complete genomehypothetical protein01299
CU928160:1978500:1998063199806319999311869Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein, Six-hairpin glycosyltransferases domain01299
NC_019904:3216416:3227181322718132293012121Echinicola vietnamensis DSM 17526 chromosome, complete genomehypothetical protein4e-23110
NC_015520:2821406:2840150284015028422012052Mahella australiensis 50-1 BON chromosome, complete genomehypothetical protein2e-21104
NC_009615:4031335:4037225403722540392762052Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein1e-1792
NC_020210:1951746:1958990195899019609211932Geobacillus sp. GHH01, complete genomeAraN-like protein5e-1479.7
NC_013642:942767:9459699459699478311863Thermotoga naphthophila RKU-10, complete genomeprotein of unknown function DUF16802e-1274.7
NC_013411:2767400:2767400276740027693221923Geobacillus sp. Y412MC61, complete genomeprotein of unknown function DUF16802e-1171.6
NC_020291:1045058:1056866105686610588541989Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomehypothetical protein2e-1171.2
NC_014484:1594396:1599307159930716012381932Spirochaeta thermophila DSM 6192 chromosome, complete genomeputative cytoplasmic protein5e-1066.6
NC_009615:4031335:4039301403930140411541854Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein1e-0758.5