Pre_GI: BLASTP Hits

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Query: NC_016582:9422650:9429399 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9429399, End: 9430046, Length: 648

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016887:3255500:327085832708583271547690Nocardia cyriacigeorgica GUH-2, complete genomeNitrate reductase molybdenum cofactor assembly chaperone3e-27122
NC_009953:188000:212280212280212951672Salinispora arenicola CNS-205 chromosome, complete genomenitrate reductase molybdenum cofactor assembly chaperone2e-21102
NC_009953:3552738:357385535738553574478624Salinispora arenicola CNS-205 chromosome, complete genomenitrate reductase molybdenum cofactor assembly chaperone6e-1994
NC_003888:211748:211748211748212551804Streptomyces coelicolor A3(2), complete genomenitrate reductase delta chain NarJ22e-1685.9
NC_006322:1994000:201159620115962012138543Bacillus licheniformis ATCC 14580, complete genomeNarJ3e-0858.5
NC_014562:2563466:256274125627412563469729Pantoea vagans C9-1 chromosome, complete genomerespiratory nitrate reductase 1 delta chain1e-0653.1