Pre_GI: BLASTP Hits

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Query: NC_016582:7737930:7758567 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 7758567, End: 7759439, Length: 873

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020453:7409402:741263474126347413434801Agromonas oligotrophica S58 DNA, complete genomeputative ectoine hydroxylase EctD2e-35149
NC_014841:131308:143450143450144250801Pantoea sp. At-9b plasmid pPAT9B04, complete sequencephytanoyl-CoA dioxygenase1e-34147
NC_013169:2045000:205004520500452050992948Kytococcus sedentarius DSM 20547, complete genomeectoine hydroxylase3e-30132
NC_008340:420126:438141438141439049909Alkalilimnicola ehrlichei MLHE-1, complete genomePhytanoyl-CoA dioxygenase2e-25116
NC_013960:2761353:277153927715392772447909Nitrosococcus halophilus Nc4 chromosome, complete genomeectoine hydroxylase4e-25115
NC_015724:339500:346295346295347113819Cupriavidus necator N-1 plasmid BB2p, complete sequenceectoine hydroxylase EctD3e-1789.4
NC_015703:3842144:386515838651583865946789Runella slithyformis DSM 19594 chromosome, complete genomephytanoyl-CoA dioxygenase2e-1273.6
NC_008278:2772726:278969527896952790621927Frankia alni ACN14a, complete genomehypothetical protein4e-1065.5
NC_003911:2540453:256660725666072567521915Silicibacter pomeroyi DSS-3, complete genomephytanoyl-CoA dioxygenase family protein3e-0962.8
NC_016935:2256000:228549522854952286238744Paenibacillus mucilaginosus 3016 chromosome, complete genomephytanoyl-CoA dioxygenase6e-0755.1
NC_015690:1726000:175545117554511756194744Paenibacillus mucilaginosus KNP414 chromosome, complete genomephytanoyl-CoA dioxygenase6e-0755.1