Pre_GI: BLASTP Hits

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Query: NC_016582:7737930:7740119 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 7740119, End: 7740910, Length: 792

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014666:2629799:264607026460702646864795Frankia sp. EuI1c chromosome, complete genomeABC-2 type transporter3e-50198
NC_013595:196493:210235210235211008774Streptosporangium roseum DSM 43021, complete genomeABC transporter permease2e-49196
NC_008278:2772726:278747227874722788233762Frankia alni ACN14a, complete genomeABC transporter system integral membrane protein1e-39163
NC_018681:3541484:354366335436633544424762Nocardia brasiliensis ATCC 700358 chromosome, complete genomeABC transporter permease1e-31136
NC_009380:4944183:495904549590454959806762Salinispora tropica CNB-440 chromosome, complete genomeABC transporter3e-31135
NC_015690:1818333:183669818366981837465768Paenibacillus mucilaginosus KNP414 chromosome, complete genomeABC transporter permease9e-31134
NC_016935:2347691:236656923665692367336768Paenibacillus mucilaginosus 3016 chromosome, complete genomeABC transporter permease8e-31134
NC_016935:1636278:170091817009181701688771Paenibacillus mucilaginosus 3016 chromosome, complete genomeABC transporter permease5e-30131
NC_014666:4547873:457043345704334571245813Frankia sp. EuI1c chromosome, complete genomeABC-2 type transporter2e-24113
NC_013891:640784:663016663016663783768Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomeABC transporter, permease protein6e-21101
NC_015671:3211972:322941132294113230238828Cellvibrio gilvus ATCC 13127 chromosome, complete genomeABC transporter7e-21100
NC_013159:3858425:385766738576673858440774Saccharomonospora viridis DSM 43017, complete genomeABC-type multidrug transport system, permease component7e-1477.8
NC_016111:4115097:411607441160744116916843Streptomyces cattleya NRRL 8057, complete genomeIntegral membrane transport protein6e-1271.2
NC_015957:1070500:109971810997181100581864Streptomyces violaceusniger Tu 4113 chromosome, complete genomeABC-2 type transporter1e-1170.5
NC_013235:5849659:587077358707735871606834Nakamurella multipartita DSM 44233, complete genomeABC-2 type transporter1e-1170.1
NC_003888:4750489:477412547741254774967843Streptomyces coelicolor A3(2), complete genomeABC transport system integral membrane protein4e-1168.6
NC_009953:3316782:333050733305073331367861Salinispora arenicola CNS-205 chromosome, complete genomeABC transporter2e-1065.9
NC_013889:1439326:144400614440061444770765Thioalkalivibrio sp. K90mix chromosome, complete genomeABC-2 type transporter9e-0857.4
NC_002944:1285436:129991912999191300659741Mycobacterium avium subsp. paratuberculosis K-10, complete genomeDrrB2e-0756.2
NC_013523:959625:962746962746963582837Sphaerobacter thermophilus DSM 20745 chromosome 1, complete genomeABC-2 type transporter7e-0754.7
NC_016948:3381848:340068634006863401426741Mycobacterium intracellulare MOTT-64 chromosome, complete genomedrrB2e-0653.5
NC_016947:3309898:332908333290833329484402Mycobacterium intracellulare MOTT-02 chromosome, complete genomedrrB2e-0653.1
NC_016604:297687:312172312172312915744Mycobacterium rhodesiae NBB3 chromosome, complete genomemultidrug ABC transporter permease3e-0652.4
NC_017904:3415700:343457234345723435303732Mycobacterium sp. MOTT36Y chromosome, complete genomeABC transporter efflux protein, DrrB family protein7e-0651.2