Pre_GI: BLASTP Hits

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Query: NC_016582:7699420:7717466 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 7717466, End: 7720210, Length: 2745

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:6589575:6599345659934566020472703Pseudomonas fluorescens F113 chromosome, complete genomeatpase involved in chromosome partitioning1e-82308
NC_017277:1957399:1961522196152219643412820Synechocystis sp. PCC 6803, complete genomehypothetical protein8e-77289
NC_017052:1957598:1961721196172119645402820Synechocystis sp. PCC 6803 substr. PCC-N, complete genomehypothetical protein8e-77289
NC_017039:1957610:1961733196173319645522820Synechocystis sp. PCC 6803 substr. PCC-P, complete genomehypothetical protein8e-77289
NC_000911:1957758:1962705196270519655242820Synechocystis sp. PCC 6803, complete genomehypothetical protein8e-77289
NC_005125:3446470:3455900345590034585692670Gloeobacter violaceus PCC 7421, complete genomehypothetical protein2e-1379