Pre_GI: BLASTP Hits

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Query: NC_016582:4934854:4954698 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 4954698, End: 4955627, Length: 930

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008268:2313583:231358323135832314497915Rhodococcus sp. RHA1, complete genomehypothetical protein7e-65247
NC_012522:2031786:203230820323082033222915Rhodococcus opacus B4, complete genomehypothetical protein9e-64243
NC_016887:1714664:174353017435301744516987Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein2e-43176
NC_018583:95388:105122105122106090969Gordonia sp. KTR9 plasmid pGKT3, complete sequencehypothetical protein3e-43176
NC_008268:7576365:759377875937787594665888Rhodococcus sp. RHA1, complete genomehypothetical protein2e-34146
NC_011761:2067695:206976720697672070657891Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completehypothetical protein1e-24114
NC_013510:1786194:180343618034361804425990Thermomonospora curvata DSM 43183, complete genomehypothetical protein5e-1892
NC_016887:5607272:561205156120515613040990Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein7e-1684.7
NC_013510:5394432:5407821540782154089331113Thermomonospora curvata DSM 43183, complete genomehypothetical protein3e-0755.8