Pre_GI: BLASTP Hits

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Query: NC_016582:4874500:4892665 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 4892665, End: 4893879, Length: 1215

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017223:3345902:3356009335600933572201212Bordetella pertussis CS chromosome, complete genomehypothetical protein4e-21102
NC_002929:3305682:3315789331578933170001212Bordetella pertussis Tohama I, complete genomehypothetical protein4e-21102
NC_014210:2747787:2758446275844627596391194Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,SMC domain protein7e-1892
NC_010424:422029:439948439948440436489Candidatus Desulforudis audaxviator MP104C, complete genome1e-1068.2
NC_013892:3278647:3296381329638132974721092Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein4e-0962.8
NC_014228:3391500:3419252341925234203431092Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein5e-0962.8
NC_007645:3581114:3601492360149236026521161Hahella chejuensis KCTC 2396, complete genomepredicted ATPase3e-0860.1
NC_009614:4802000:4817691481769148187791089Bacteroides vulgatus ATCC 8482 chromosome, complete genomehypothetical protein3e-0859.7
NC_011726:2793669:2794142279414227953291188Cyanothece sp. PCC 8801, complete genomehypothetical protein7e-0858.9
NC_009767:5464796:5476022547602254771341113Roseiflexus castenholzii DSM 13941, complete genomehypothetical protein1e-0757.8
NC_013161:3448966:3466129346612934673161188Cyanothece sp. PCC 8802, complete genomehypothetical protein1e-0757.8
NC_012912:4071859:4106325410632541074161092Dickeya zeae Ech1591, complete genomeSMC domain protein2e-0757.4
NC_015947:444466:4509254509254520851161Burkholderia sp. JV3 chromosome, complete genomehypothetical protein2e-0757
NC_009441:4384500:4399792439979244008861095Flavobacterium johnsoniae UW101 chromosome, complete genomeATPase-like protein3e-0756.6
NC_011978:15059:3984439844410821239Thermotoga neapolitana DSM 4359, complete genomeATPase-like protein3e-0756.6
NC_015437:438538:4543434543434554281086Selenomonas sputigena ATCC 35185 chromosome, complete genomeSMC domain protein1e-0654.3
NC_021184:1484352:1502760150276015045771818Desulfotomaculum gibsoniae DSM 7213, complete genomeputative ATP-dependent endonuclease of the OLD family2e-0654.3