Pre_GI: BLASTP Hits

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Query: NC_016582:4874500:4885226 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 4885226, End: 4886920, Length: 1695

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018681:5627940:5651284565128456529781695Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein4e-58226
NC_008278:6854759:6865509686550968671791671Frankia alni ACN14a, complete genomehypothetical protein2e-46187
NC_018531:3983925:3990734399073439923861653Arthrobacter sp. Rue61a chromosome, complete genomehypothetical protein3e-25117
NC_012483:3731542:3788737378873737902991563Acidobacterium capsulatum ATCC 51196, complete genomehypothetical protein1e-21105
NC_007963:2644930:2665734266573426674161683Chromohalobacter salexigens DSM 3043, complete genomehypothetical protein3e-21103
NC_020064:2697116:2709113270911327109751863Serratia marcescens FGI94, complete genomesporadically distributed protein, TIGR04141 family4e-1686.7
NC_012997:4545875:4566935456693545684881554Teredinibacter turnerae T7901, complete genomehypothetical protein5e-1479.7
NC_010994:859500:8694198694198712871869Rhizobium etli CIAT 652, complete genomehypothetical protein2e-1377.8
NC_015381:3789661:380170838017083802700993Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein3e-1273.9
NC_014562:2563466:2575185257518525767951611Pantoea vagans C9-1 chromosome, complete genomehypothetical protein4e-1273.6
NC_014414:1104386:1118218111821811198911674Parvularcula bermudensis HTCC2503 chromosome, complete genomehypothetical protein5e-1273.2
NC_016114:3575955:3584834358483435864051572Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehypothetical protein3e-1170.5
NC_012214:2805297:2814057281405728156671611Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein3e-1067.4
NC_013971:73037:8521585215868221608Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein1e-0965.1
NC_013961:73037:8521585215868221608Erwinia amylovora, complete genomehypothetical protein1e-0965.1
NC_014323:3292082:3303638330363833052331596Herbaspirillum seropedicae SmR1 chromosome, complete genomehypothetical protein1e-0862