Pre_GI: BLASTP Hits

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Query: NC_016582:2641499:2642381 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 2642381, End: 2643496, Length: 1116

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010623:72500:8346583465845681104Burkholderia phymatum STM815 chromosome 2, complete sequenceNMT1/THI5 like domain protein6e-25115
NC_011894:3029964:3076390307639030774541065Methylobacterium nodulans ORS 2060, complete genomeNMT1/THI5 like domain protein2e-24113
NC_010511:871905:8786098786098796731065Methylobacterium sp. 4-46 chromosome, complete genomeNMT1/THI5-like domain-containing protein1e-22107
NC_009921:3666898:3679244367924436803321089Frankia sp. EAN1pec, complete genomeNMT1/THI5 like domain protein6e-21102
NC_014829:4565467:456697645669764567959984Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeABC transporter substrate-binding protein2e-0963.5
NC_015172:1429266:1441303144130314423431041Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeextracellular solute-binding protein family 36e-0962
NC_012914:5372712:5391435539143553924931059Paenibacillus sp. JDR-2, complete genomeNMT1/THI5 like domain protein9e-0961.6
NC_006361:2920028:2920028292002829210681041Nocardia farcinica IFM 10152, complete genomehypothetical protein4e-0859.3
NC_012108:481657:497894497894498832939Desulfobacterium autotrophicum HRM2, complete genomeABC-type transporter, substrate-binding protein1e-0758.2
NC_012914:5618000:5645455564545556464801026Paenibacillus sp. JDR-2, complete genomeNMT1/THI5 like domain protein3e-0756.6
NC_016627:2637226:2638180263818026392201041Clostridium clariflavum DSM 19732 chromosome, complete genomenitrate/sulfonate/bicarbonate ABC transporter periplasmic protein3e-0756.6
NC_014171:723155:7477697477697487701002Bacillus thuringiensis BMB171 chromosome, complete genomehydroxymethylpyrimidine-binding protein9e-0755.1
NC_009253:3017280:301728030172803018239960Desulfotomaculum reducens MI-1 chromosome, complete genomeNLPA lipoprotein1e-0654.7
NC_005945:754517:7545177545177555181002Bacillus anthracis str. Sterne, complete genomeABC transporter, substrate-binding protein, putative3e-0653.1