Pre_GI: BLASTP Hits

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Query: NC_016582:175589:193534 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 193534, End: 194376, Length: 843

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017150:2244950:224775122477512248545795Acetobacter pasteurianus IFO 3283-01-42C, complete genomelinocin M18 bacteriocin protein2e-87322
NC_017146:2339848:234264923426492343443795Acetobacter pasteurianus IFO 3283-26, complete genomelinocin M18 bacteriocin protein2e-87322
NC_017125:2339806:234260723426072343401795Acetobacter pasteurianus IFO 3283-22, complete genomelinocin M18 bacteriocin protein2e-87322
NC_017121:2337168:233996923399692340763795Acetobacter pasteurianus IFO 3283-07, complete genomelinocin M18 bacteriocin protein2e-87322
NC_017111:2337181:233998223399822340776795Acetobacter pasteurianus IFO 3283-32, complete genomelinocin M18 bacteriocin protein2e-87322
NC_017108:2337163:233996423399642340758795Acetobacter pasteurianus IFO 3283-12, complete genomelinocin M18 bacteriocin protein2e-87322
NC_017100:2339826:234262723426272343421795Acetobacter pasteurianus IFO 3283-03, complete genomelinocin M18 bacteriocin protein2e-87322
NC_013209:2337204:234000523400052340799795Acetobacter pasteurianus IFO 3283-01, complete genomelinocin M18 bacteriocin protein2e-87322
NC_016027:229180:259123259123259917795Gluconacetobacter xylinus NBRC 3288, complete genomelinocin M18 bacteriocin protein5e-85314
NC_015723:961909:972332972332973150819Cupriavidus necator N-1 chromosome 2, complete sequencelinocin-M182e-84311
NC_008544:615448:640085640085640900816Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceLinocin_M18 bacteriocin protein2e-83309
NC_010512:1196616:122261312226131223428816Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceLinocin_M18 bacteriocin protein9e-83306
NC_014654:895298:903773903773904573801Halanaerobium sp. 'sapolanicus' chromosome, complete genomeLinocin_M18 bacteriocin protein1e-35150
NC_014720:2420455:242350024235002424294795Caldicellulosiruptor kronotskyensis 2002 chromosome, completelinocin_m18 bacteriocin protein1e-0963.5
NC_018607:2472250:249631624963162497125810Brachyspira pilosicoli B2904 chromosome, complete genomelinocin M18 bacteriocin protein2e-0860.1
NC_019908:1565500:158803015880301588839810Brachyspira pilosicoli P43/6/78 chromosome, complete genomelinocin M18 bacteriocin protein2e-0860.1