Pre_GI: BLASTP Hits

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Query: NC_016582:175589:179233 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 179233, End: 181191, Length: 1959

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003919:4618988:4619746461974646217311986Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein4e-123442
NC_003366:1427785:1439365143936514423703006Clostridium perfringens str. 13, complete genomehyaluronidase4e-73276
NC_009615:1305678:1319346131934613218592514Parabacteroides distasonis ATCC 8503 chromosome, complete genomeglycoside hydrolase5e-64246
NC_018866:2033960:2036998203699820386021605Dehalobacter sp. DCA chromosome, complete genomebeta-N-acetylglucosaminidase8e-52205
NC_018867:2063741:2066779206677920683831605Dehalobacter sp. CF chromosome, complete genomebeta-N-acetylglucosaminidase8e-52205
NC_014933:1759729:1762162176216217647172556Bacteroides helcogenes P 36-108 chromosome, complete genomeHyaluronidase3e-51203