Pre_GI: BLASTP Hits

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Query: NC_016582:11820671:11848071 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11848071, End: 11850365, Length: 2295

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015125:2288487:2302291230229123054133123Microbacterium testaceum StLB037, complete genomehypothetical protein0860
NC_011898:1218500:1225844122584412327046861Clostridium cellulolyticum H10, complete genomeCarbohydrate-binding family 91e-98361
NC_017186:6108676:6108676610867661106401965Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein6e-47189
NC_014318:6108633:6108633610863361105971965Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein6e-47189
NC_009614:3714770:3724013372401337260282016Bacteroides vulgatus ATCC 8482 chromosome, complete genomehypothetical protein2e-43177
NC_013960:1319349:1326964132696413291382175Nitrosococcus halophilus Nc4 chromosome, complete genomeParallel beta-helix repeat protein2e-40167
NC_015520:2821406:2828084282808428337385655Mahella australiensis 50-1 BON chromosome, complete genomeIg domain-containing protein group 2 domain-containing protein2e-39164
NC_016113:803268:8210218210218228861866Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencehypothetical protein3e-31137
NC_015520:2821406:2823133282313328280104878Mahella australiensis 50-1 BON chromosome, complete genomecarbohydrate binding family 61e-27125
NC_015520:2821406:2846511284651128511334623Mahella australiensis 50-1 BON chromosome, complete genomecarbohydrate binding family 61e-25119
NC_013857:478000:4896944896944915741881Azospirillum sp. B510 plasmid pAB510c, complete sequencehypothetical protein2e-1275.5
NC_010571:2423732:2427838242783824292141377Opitutus terrae PB90-1, complete genomePectate lyase3e-0757.8
NC_012034:1925983:1933527193352719354881962Anaerocellum thermophilum DSM 6725, complete genomePectate disaccharide-lyase1e-0552.8