Pre_GI: BLASTP Hits

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Query: NC_016582:11820671:11824956 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11824956, End: 11825951, Length: 996

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013093:3068486:3100521310052131015671047Actinosynnema mirum DSM 43827, complete genomehypothetical protein1e-83310
NC_013521:1619394:162369516236951624666972Sanguibacter keddieii DSM 10542, complete genomehypothetical protein2e-58226
NC_014817:332000:3335773335773373233747Asticcacaulis excentricus CB 48 chromosome 2, complete sequenceglycoside hydrolase family 434e-49195
NC_014169:2353711:2377473237747323806643192Bifidobacterium longum subsp. longum JDM301 chromosome, completearabinosidase5e-40165
NC_013929:1119384:1147955114795511493821428Streptomyces scabiei 87.22 chromosome, complete genomeglycosidase4e-32139
NC_013929:1119384:1151179115117911525551377Streptomyces scabiei 87.22 chromosome, complete genomeglycosidase4e-24112
NC_016582:10159486:1018820010188200101896001401Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative hydrolase9e-23107
NC_004663:4729452:473517747351774736148972Bacteroides thetaiotaomicron VPI-5482, complete genomearabinosidase7e-22104
NC_014655:2581968:258196825819682582879912Leadbetterella byssophila DSM 17132 chromosome, complete genomeglycoside hydrolase family 436e-1995.1
NC_004663:5437794:5452139545213954550992961Bacteroides thetaiotaomicron VPI-5482, complete genomebeta-galactosidase I1e-1687.8
NC_015177:391774:4009844009844021471164Pedobacter saltans DSM 12145 chromosome, complete genomehypothetical protein2e-1583.6
NC_014817:332000:3373343373343392381905Asticcacaulis excentricus CB 48 chromosome 2, complete sequenceglycoside hydrolase family 436e-1478.6
NC_004663:4729452:4736190473619047386252436Bacteroides thetaiotaomicron VPI-5482, complete genomeputative beta-xylosidase3e-1066.2