Pre_GI: BLASTP Hits

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Query: NC_016582:11734963:11748193 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11748193, End: 11749401, Length: 1209

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014720:154111:1859811859811926706690Caldicellulosiruptor kronotskyensis 2002 chromosome, completeglycoside hydrolase family 166e-1065.9
NC_006582:755294:769595769595770437843Bacillus clausii KSM-K16, complete genomeendo-beta-1,3-glucanase6e-1065.5
NC_012883:287965:311958311958312917960Thermococcus sibiricus MM 739, complete genomeLaminarinase (endo-beta-1,3-glucanase) (extracellular)5e-0962.4
NC_015844:1188360:1207535120753512089831449Zobellia galactanivorans, complete genomeendo-1,3-beta-glucanase2e-0757.4
NC_014008:1246642:1259430125943012606201191Coraliomargarita akajimensis DSM 45221 chromosome, complete genomeglycoside hydrolase family 166e-0755.8
NC_014720:154111:1594781594781667857308Caldicellulosiruptor kronotskyensis 2002 chromosome, completeglycoside hydrolase family 166e-0755.8
NC_008262:2824503:2841969284196928446202652Clostridium perfringens SM101, complete genomelaminarinase1e-0654.7
NC_019897:1224798:1224798122479812260541257Thermobacillus composti KWC4 chromosome, complete genomebeta-glucanase/beta-glucan synthetase6e-0652.4