Pre_GI: BLASTP Hits

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Query: NC_016582:11380000:11399668 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11399668, End: 11400876, Length: 1209

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019748:4129500:4139504413950441406761173Stanieria cyanosphaera PCC 7437, complete genomemajor facilitator superfamily MFS_11e-40167
NC_011295:246000:2562492562492574421194Coprothermobacter proteolyticus DSM 5265, complete genomehypothetical protein5e-37155
NC_007775:1153631:1155508115550811566981191Synechococcus sp. JA-3-3Ab, complete genometransporter, major facilitator family5e-28125
NC_014471:1153438:1173908117390811750741167Ignisphaera aggregans DSM 17230 chromosome, complete genomemajor facilitator superfamily MFS_18e-21101
NC_014961:490551:5125325125325136771146Desulfurococcus mucosus DSM 2162 chromosome, complete genomemajor facilitator superfamily protein6e-2099
NC_009376:1579332:1586746158674615878401095Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomemajor facilitator superfamily transporter2e-1583.6
NC_016645:1059482:1063868106386810648961029Pyrobaculum sp. 1860 chromosome, complete genomemajor facilitator superfamily protein9e-1168.2
NC_016147:1672482:1682581168258116837891209Pseudoxanthomonas spadix BD-a59 chromosome, complete genomemajor facilitator transporter1e-1067.8
NC_009776:707785:7067887067887078011014Ignicoccus hospitalis KIN4/I, complete genomemajor facilitator superfamily MFS_11e-0964.7
NC_007908:4069150:4077067407706740782871221Rhodoferax ferrireducens T118, complete genomemajor facilitator superfamily MFS_11e-0964.7
NC_016024:1185388:1184192118419211853911200Candidatus Chloracidobacterium thermophilum B chromosome chromosomemajor facilitator superfamily protein6e-0962.4
NC_011766:75500:852238522385570348Desulfurococcus kamchatkensis 1221n chromosome, complete genomemajor facilitator superfamily MFS_1 protein3e-0860.1
NC_005125:3981987:4006677400667740078611185Gloeobacter violaceus PCC 7421, complete genomehypothetical protein4e-0859.7
NC_012115:691154:7083067083067094151110Nautilia profundicola AmH, complete genomeputative permeases of the major facilitator superfamily6e-0755.8
NC_015416:621513:6262316262316273881158Methanosaeta concilii GP-6 chromosome, complete genomemajor facilitator family transporter8e-0755.1
NC_006624:1448165:1449887144988714510831197Thermococcus kodakarensis KOD1, complete genomepredcited permease, major facilitator superfamily1e-0654.3
NC_013093:1909305:1921062192106219223241263Actinosynnema mirum DSM 43827, complete genomemajor facilitator superfamily MFS_12e-0654.3
NC_012489:1797032:1813745181374518149351191Gemmatimonas aurantiaca T-27, complete genomeputative major facilitator superfamily protein3e-0653.5
NC_011369:1135592:1184693118469311859221230Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, completemajor facilitator superfamily protein9e-0651.6