Pre_GI: BLASTP Hits

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Query: NC_016582:11380000:11385015 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11385015, End: 11385608, Length: 594

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014498:62891:809908099081487498Streptococcus pneumoniae 670-6B chromosome, complete genomecarbonate dehydratase7e-1373.6
NC_014494:47049:624086240862974567Streptococcus pneumoniae AP200 chromosome, complete genomecarbonic anhydrase8e-1373.6
NC_014098:2971011:299152629915262992032507Bacillus tusciae DSM 2912 chromosome, complete genomecarbonic anhydrase2e-1272
NC_014664:1560926:156092615609261561507582Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomecarbonic anhydrase6e-1167.4
NC_011206:1379068:138732613873261387910585Acidithiobacillus ferrooxidans ATCC 53993, complete genomecarbonic anhydrase1e-1066.6
NC_015660:1784553:178455317845531785137585Geobacillus thermoglucosidasius C56-YS93 chromosome, completecarbonic anhydrase3e-1064.7
NC_014650:1763308:176330817633081763892585Geobacillus sp. Y4.1MC1 chromosome, complete genomecarbonic anhydrase3e-1064.7
NC_008726:4725389:474657247465724747063492Mycobacterium vanbaalenii PYR-1, complete genomecarbonic anhydrase2e-0962.4
NC_015562:755785:775588775588776067480Methanotorris igneus Kol 5 chromosome, complete genomecarbonic anhydrase4e-0961.2
NC_019673:359540:381395381395381901507Saccharothrix espanaensis DSM 44229 complete genomeCarbonic anhydrase6e-0960.5
NC_010001:1806000:180640818064081806950543Clostridium phytofermentans ISDg, complete genomecarbonic anhydrase2e-0652.4