Pre_GI: BLASTP Hits

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Query: NC_016582:10287865:10305032 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10305032, End: 10305622, Length: 591

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016887:5607272:562611956261195626700582Nocardia cyriacigeorgica GUH-2, complete genometranscriptional regulator5e-47187
NC_018750:8210500:821132182113218211944624Streptomyces venezuelae ATCC 10712, complete genomeTranscriptional regulator, TetR family2e-1582.4
NC_015497:4564339:458567145856714586306636Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeregulatory protein TetR7e-1373.6
NC_020410:495184:541048541048541626579Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeputative transcriptional regulator (TetR/AcrR family)4e-1271.2
NC_014622:653599:671913671913672491579Paenibacillus polymyxa SC2 chromosome, complete genometranscriptional regulator7e-1270.5
UCMB5137:1:351163511635694579Bacillus atrophaeus UCMB-5137putative transcriptional regulator (TetR/AcrR family)1e-1170.1
NC_016818:1795576:183643218364321837088657Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completetranscriptional regulator2e-1168.9
NC_017186:361444:397274397274397849576Amycolatopsis mediterranei S699 chromosome, complete genomeTetR family transcriptional regulator3e-1168.2
NC_014318:381384:397261397261397836576Amycolatopsis mediterranei U32 chromosome, complete genomeTetR family transcriptional regulator3e-1168.2
NC_019697:4108944:412618041261804126779600Chamaesiphon minutus PCC 6605, complete genometranscriptional regulator4e-1167.8
NC_013530:3082587:309810430981043098850747Xylanimonas cellulosilytica DSM 15894, complete genometranscriptional regulator, TetR family5e-1167.4
NC_015957:115133:130740130740131387648Streptomyces violaceusniger Tu 4113 chromosome, complete genomeregulatory protein TetR8e-1167
NC_015556:2265940:230102223010222301573552Pseudomonas fulva 12-X chromosome, complete genomeregulatory protein TetR9e-1166.6
NC_009953:3426344:344533134453313445921591Salinispora arenicola CNS-205 chromosome, complete genomeTetR family transcriptional regulator4e-1064.7
NC_007777:2638580:266374526637452664266522Frankia sp. CcI3, complete genometranscriptional regulator, TetR family9e-1063.2
NC_016582:10326938:103509081035090810351474567Streptomyces bingchenggensis BCW-1 chromosome, complete genometranscriptional regulator2e-0962.4
NC_013521:2254534:227353822735382274206669Sanguibacter keddieii DSM 10542, complete genometranscriptional regulator, tetR family6e-0857.4
NC_007333:1677406:169512416951241695765642Thermobifida fusca YX, complete genomehypothetical protein9e-0856.6
NC_008278:3601959:360548336054833606088606Frankia alni ACN14a, complete genomeputative PhlF, transcriptional repressor of 2, 4-DAPG biosynthesis, TetR family4e-0754.7
NC_018524:5066720:507384450738445074395552Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebacterial regulatory s, tetR family protein1e-0653.1
NC_009338:3410349:342183734218373422478642Mycobacterium gilvum PYR-GCK chromosome, complete genomeTetR family transcriptional regulator2e-0652.4
NC_014814:2588628:263759526375952638245651Mycobacterium sp. Spyr1 chromosome, complete genometranscriptional regulator2e-0652.4
NC_014666:4043279:406098240609824061575594Frankia sp. EuI1c chromosome, complete genomeregulatory protein TetR2e-0652.4
NC_008278:2863355:287201528720152872626612Frankia alni ACN14a, complete genomehypothetical protein3e-0651.6
NC_016947:70210:800528005280741690Mycobacterium intracellulare MOTT-02 chromosome, complete genomeTetR family transcriptional regulator3e-0651.6
NC_010338:426388:448627448627449271645Caulobacter sp. K31, complete genometranscriptional regulator, TetR family4e-0651.6
NC_013169:513327:535446535446536012567Kytococcus sedentarius DSM 20547, complete genometranscriptional regulator, tetR family5e-0650.8