Pre_GI: BLASTP Hits

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Query: NC_016582:10159486:10198949 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10198949, End: 10200124, Length: 1176

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013729:2157785:2188047218804721893661320Kribbella flavida DSM 17836, complete genomeextracellular solute-binding protein family 19e-43174
NC_007761:57199:7815178151794371287Rhizobium etli CFN 42, complete genomeprobable sugar ABC transporter, substrate-binding protein7e-38158
NC_013093:1036772:1083604108360410848901287Actinosynnema mirum DSM 43827, complete genomeextracellular solute-binding protein family 11e-32140
NC_012669:1011473:1031381103138110327061326Beutenbergia cavernae DSM 12333, complete genomeextracellular solute-binding protein family 15e-31135
NC_018720:311844:3222713222713236261356Bifidobacterium asteroides PRL2011 chromosome, complete genomeABC transporter, extracellular substrate binding protein6e-26118
NC_019896:3281193:3301197330119733024621266Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein2e-25117
NC_013406:1217385:1219223121922312205481326Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-21104
NC_009664:4696961:4754108475410847554901383Kineococcus radiotolerans SRS30216, complete genomeextracellular solute-binding protein family 13e-21102
NC_009664:63230:7370973709750071299Kineococcus radiotolerans SRS30216, complete genomeextracellular solute-binding protein family 11e-20100
NC_015145:3657103:3668072366807236693851314Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomecarbohydrate ABC transporter substrate-binding protein, CUT1 family1e-1791.3
NC_020260:440000:4639564639564652451290Cronobacter sakazakii Sp291, complete genomeABC transporter periplasmic binding protein4e-1789.4
NC_016612:361417:3791213791213804071287Klebsiella oxytoca KCTC 1686 chromosome, complete genomeoligogalacturonide transport system substrate-binding protein1e-1481.3
NC_012880:2399205:2416897241689724181891293Dickeya dadantii Ech703, complete genomeextracellular solute-binding protein family 13e-1376.3
NC_002570:1195356:1209140120914012104441305Bacillus halodurans C-125, complete genomehypothetical protein7e-1375.5
NC_020995:751311:7625637625637638551293Enterococcus casseliflavus EC20, complete genomehypothetical protein2e-1273.9
NC_018720:1611213:1621188162118816224951308Bifidobacterium asteroides PRL2011 chromosome, complete genomeABC transporter, extracellular substrate binding protein3e-1273.2
NC_015690:2039215:2052584205258420539121329Paenibacillus mucilaginosus KNP414 chromosome, complete genomeextracellular solute-binding protein8e-0755.1
NC_012491:6143928:6148872614887261501701299Brevibacillus brevis NBRC 100599, complete genomeprobable ABC transporter substrate binding protein2e-0654.3
NC_016935:2567039:2601872260187226032001329Paenibacillus mucilaginosus 3016 chromosome, complete genomeextracellular solute-binding protein3e-0653.5