Pre_GI: BLASTP Hits

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Query: NC_016582:10137951:10145762 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10145762, End: 10146406, Length: 645

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016582:10159486:1018985610189856101915021647Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative glycosyl hydrolase/xylanase1e-83308
NC_011898:1512213:1512213151221315144532241Clostridium cellulolyticum H10, complete genomeCarbohydrate binding family 61e-1996.3
NC_015514:1923428:1926115192611519277491635Cellulomonas fimi ATCC 484 chromosome, complete genomeglycoside hydrolase family 439e-1787
NC_019897:2959002:2972923297292329764233501Thermobacillus composti KWC4 chromosome, complete genomebeta-xylosidase2e-1582.8
NC_014655:2533929:2548503254850325500051503Leadbetterella byssophila DSM 17132 chromosome, complete genomeglycoside hydrolase family 438e-1580.5
NC_011898:1558208:1558208155820815597101503Clostridium cellulolyticum H10, complete genomeglycoside hydrolase family 432e-1479.3
NC_014169:1909482:1911999191199919136421644Bifidobacterium longum subsp. longum JDM301 chromosome, completepyridine nucleotide-disulfide oxidoreductase4e-1271.2
NC_009614:29604:4086140861424441584Bacteroides vulgatus ATCC 8482 chromosome, complete genomeglycoside hydrolase7e-1270.9
NC_016641:4727000:4738905473890547404161512Paenibacillus terrae HPL-003 chromosome, complete genomeglycoside hydrolase1e-1170.1
NC_015977:3215770:3240247324024732417431497Roseburia hominis A2-183 chromosome, complete genomeCHU large protein5e-0961.2