Pre_GI: BLASTP Hits

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Query: NC_015761:1970042:1971925 Salmonella bongori NCTC 12419, complete genome

Start: 1971925, End: 1972170, Length: 246

Host Lineage: Salmonella bongori; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella bongori is the second species of Salmonella after Salmonella enterica and is considered a distant outgroup. This species is reptile-specific, is rarely found in human infections and it lacks SPI-2. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:2029340:203121720312172031462246Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein8e-40162
NC_016857:2027311:202918820291882029406219Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein1e-34145
NC_016810:2027311:202918820291882029406219Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-34145
AC_000091:2027648:203032520303252030507183Escherichia coli W3110 DNA, complete genomehypothetical protein2e-21100
NC_010498:1210145:123100012310001231182183Escherichia coli SMS-3-5, complete genomehypothetical protein2e-21100
CP002516:1902431:192600619260061926188183Escherichia coli KO11, complete genomeProtein of unknown function DUF21582e-21100
NC_012947:1769438:180896718089671809149183Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-21100
NC_016822:2201388:220406522040652204247183Shigella sonnei 53G, complete genomehypothetical protein2e-21100
NC_016902:1902431:192600619260061926188183Escherichia coli KO11FL chromosome, complete genomehypothetical protein2e-21100
NC_021066:601029:621281621281621460180Raoultella ornithinolytica B6, complete genomehypothetical protein2e-1581.3
NC_016612:5208936:520893652089365209064129Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein9e-1062.4