Pre_GI: BLASTP Hits

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Query: NC_013716:5020204:5037835 Citrobacter rodentium ICC168, complete genome

Start: 5037835, End: 5038293, Length: 459

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009778:3454790:346721234672123467604393Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-38158
NC_020260:3457597:347001834700183470410393Cronobacter sakazakii Sp291, complete genomeinner membrane protein YqjF5e-38156
NC_017047:4379989:438122343812234381615393Rahnella aquatilis HX2 chromosome, complete genomeDoxX family protein1e-29128
NC_015061:4286000:428733742873374287729393Rahnella sp. Y9602 chromosome, complete genomeDoxX family protein1e-29128
NC_010611:154307:176490176490176927438Acinetobacter baumannii ACICU, complete genomepredicted membrane protein4e-1580.1
NC_011071:2207385:220830022083002208722423Stenotrophomonas maltophilia R551-3, complete genomeDoxX family protein1e-1272
NC_011071:4000620:400824940082494008641393Stenotrophomonas maltophilia R551-3, complete genomeDoxX family protein4e-1167
NC_015947:3991696:399846639984663998858393Burkholderia sp. JV3 chromosome, complete genomeDoxX family protein1e-1065.1
NC_002947:4362271:436186843618684362281414Pseudomonas putida KT2440, complete genomeSURF4 domain protein2e-0961.6