Pre_GI: BLASTP Hits

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Query: NC_013410:2179342:2203100 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2203100, End: 2204758, Length: 1659

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013410:2179342:2179342217934221814202079Fibrobacter succinogenes subsp. succinogenes S85 chromosome,glycoside hydrolase family protein8e-49195
NC_013131:7945280:7978271797827179796801410Catenulispora acidiphila DSM 44928, complete genomeRicin B lectin5e-45182
NC_013410:1152188:1153807115380711557321926Fibrobacter succinogenes subsp. succinogenes S85 chromosome,carbohydrate binding family 62e-36154
NC_011832:913994:9326839326839352202538Candidatus Methanosphaerula palustris E1-9c, complete genomeCarbohydrate binding family 62e-20101
NC_007645:3870466:3872025387202538738511827Hahella chejuensis KCTC 2396, complete genomeprobable glycosyl hydrolase2e-20100
NC_013410:2179342:2205140220514022070111872Fibrobacter succinogenes subsp. succinogenes S85 chromosome,carbohydrate binding family 61e-1791.7
NC_006395:217139:2184032184032206972295Haloarcula marismortui ATCC 43049 plasmid pNG700, completeputative carbohydrate binding module (family 6) protein1e-1688.6
NC_011832:1949717:1953338195333819564453108Candidatus Methanosphaerula palustris E1-9c, complete genomeCarbohydrate binding family 61e-1688.6
NC_015944:353652:3723353723353745032169Haloarcula hispanica ATCC 33960 plasmid pHH400, complete sequencecarbohydrate binding module (family 6) protein4e-1480.1
NC_013132:6385223:6388702638870263921003399Chitinophaga pinensis DSM 2588, complete genomeCarbohydrate binding family 65e-1273.2
NC_007912:3828980:3828980382898038324833504Saccharophagus degradans 2-40, complete genomehypothetical protein7e-1272.8