Pre_GI: BLASTP Hits

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Query: NC_013410:2179342:2183305 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2183305, End: 2183721, Length: 417

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011901:625712:647489647489647860372Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeXRE family transcriptional regulator2e-1478.2
NC_012778:748143:763403763403763717315Eubacterium eligens ATCC 27750, complete genomehypothetical protein8e-1062.4
NC_015497:4564339:458004945800494580396348Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomehelix-turn-helix domain protein3e-0753.9
NC_006512:2211654:221643522164352216755321Idiomarina loihiensis L2TR, complete genomePredicted transcriptional regulator, HTH-type3e-0753.9
NC_015160:2239933:224597122459712246279309Odoribacter splanchnicus DSM 20712 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0651.2