Pre_GI: BLASTP Hits

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Query: NC_013410:2037840:2068896 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2068896, End: 2071265, Length: 2370

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015501:1762450:1784191178419117865812391Porphyromonas asaccharolytica DSM 20707 chromosome, completehypothetical protein6e-120432
NC_019968:382991:4548694548694572502382Prevotella dentalis DSM 3688 chromosome 2, complete sequenceputative RND superfamily exporter3e-114413
NC_015311:1860666:1860666186066618630262361Prevotella denticola F0289 chromosome, complete genomehypothetical protein4e-112405
NC_009943:677324:6864496864496888722424Candidatus Desulfococcus oleovorans Hxd3, complete genomeexporter of the RND superfamily protein-like protein3e-65250
NC_014365:3123853:3136279313627931386932415Desulfarculus baarsii DSM 2075 chromosome, complete genomePatched family protein8e-47189
NC_016112:3190891:3203146320314632054372292Methylomicrobium alcaliphilum chromosome, complete genomehypothetical protein5e-40166
NC_007645:2533274:2548889254888925512192331Hahella chejuensis KCTC 2396, complete genomepredicted exporters of the RND superfamily1e-36155
NC_008789:1641774:1653853165385316561232271Halorhodospira halophila SL1, complete genomeexporter of the RND superfamily1e-35152
NC_009663:946285:9629089629089651662259Sulfurovum sp. NBC37-1, complete genomeRND efflux transporter2e-33144
NC_016603:3259432:3269999326999932737453747Acinetobacter calcoaceticus PHEA-2 chromosome, complete genomeexporter of the RND superfamily1e-27125
NC_008786:3323167:3332918333291833360733156Verminephrobacter eiseniae EF01-2, complete genomeexporters of the RND superfamily-like protein2e-26121
NC_017171:155836:1662971662971699473651Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeRND superfamily-like exporter9e-26119
NC_017162:158289:1686061686061722563651Acinetobacter baumannii 1656-2 chromosome, complete genomeRND superfamily-like exporter9e-26119
NC_010410:3777076:3781023378102337846733651Acinetobacter baumannii AYE, complete genomeputative efflux pump membrane transporter (RND superfamily)8e-26119
NC_011586:164746:1752131752131788633651Acinetobacter baumannii AB0057 chromosome, complete genomepolyketide cyclase/dehydrase family8e-26119
NC_011595:3607402:3611349361134936149993651Acinetobacter baumannii AB307-0294, complete genomepolyketide cyclase / dehydrase and lipid transport family protein8e-26119
NC_009085:131000:1416481416481451183471Acinetobacter baumannii ATCC 17978, complete genomeRND superfamily-like exporters4e-25117
NC_017387:147906:1585021585021620173516Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeRND superfamily exporter9e-25115
NC_010611:154307:1648151648151684653651Acinetobacter baumannii ACICU, complete genomepredicted exporter of the RND superfamily1e-24115
NC_014259:3984568:3988508398850839921613654Acinetobacter sp. DR1 chromosome, complete genomeRND superfamily exporter1e-24115
NC_009714:265098:2856252856252880662442Campylobacter hominis ATCC BAA-381, complete genomeputative integral membrane protein6e-23110
NC_014166:2498500:2539212253921225416622451Arcobacter nitrofigilis DSM 7299 chromosome, complete genomehypothetical protein1e-20102
NC_013730:1388333:1410196141019614126912496Spirosoma linguale DSM 74, complete genomePatched family protein5e-1997.1
NC_020304:968936:9856029856029875781977Desulfocapsa sulfexigens DSM 10523, complete genomeputative RND superfamily exporter5e-1790.1
NC_015732:91816:9181691816946892874Spirochaeta caldaria DSM 7334 chromosome, complete genomehypothetical protein2e-1378.2
NC_012881:478042:4966324966324993162685Desulfovibrio salexigens DSM 2638, complete genomeRND efflux transporter2e-1171.6
NC_015578:3266855:3281834328183432844522619Treponema primitia ZAS-2 chromosome, complete genomehypothetical protein1e-1069.3
NC_009512:3334579:3353480335348033560892610Pseudomonas putida F1, complete genomeexporter of the RND superfamily-like protein3e-0964.7
NC_006513:1379735:1408727140872714111532427Azoarcus sp. EbN1, complete genomehypothetical protein, putative transport protein6e-0963.5
NC_018876:1121268:1145755114575511480042250Methanolobus psychrophilus R15 chromosome, complete genomehydrophobe/amphiphile efflux-3 (HAE3) family transporter6e-0860.5
NC_014759:1957979:1962270196227019644772208Marivirga tractuosa DSM 4126 chromosome, complete genomepatched family protein2e-0655.1