Pre_GI: BLASTP Hits

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Query: NC_013410:1651000:1674051 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1674051, End: 1675238, Length: 1188

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016048:2907702:2931702293170229329101209Oscillibacter valericigenes Sjm18-20, complete genomeputative permease1e-35150
NC_014364:773500:7910347910347922601227Spirochaeta smaragdinae DSM 11293 chromosome, complete genomepermease for cytosine/purines uracil thiamine allantoin8e-22105
NC_014205:842314:8763768763768776981323Staphylothermus hellenicus DSM 12710 chromosome, complete genomehydroxymethylpyrimidine transporter CytX5e-1272.4
NC_004578:5623783:5645168564516856464571290Pseudomonas syringae pv. tomato str. DC3000, complete genomecytosine/purine/uracil/thiamine/allantoin permease family protein3e-1066.6
NC_014804:401313:4197084197084209851278Thermococcus barophilus MP chromosome, complete genomeCytX-like hydroxymethylpyrimidine transporter protein1e-0964.7