Pre_GI: BLASTP Hits

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Query: NC_013410:1591500:1607735 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1607735, End: 1610431, Length: 2697

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010498:4072681:4082773408277340854932721Escherichia coli SMS-3-5, complete genomehypothetical protein2e-81304
NC_015224:4426167:4435170443517044376712502Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein7e-79296
NC_012673:2535427:2566208256620825691832976Exiguobacterium sp. AT1b, complete genomehypothetical protein3e-25117
NC_015674:1114915:1122144112214411244952352Helicobacter bizzozeronii CIII-1, complete genomehypothetical protein5e-25117
NC_017986:5867782:5874074587407458776043531Pseudomonas putida ND6 chromosome, complete genomehypothetical protein4e-1584
NC_012526:765000:7905287905287943193792Deinococcus deserti VCD115, complete genomehypothetical protein1e-0966.2
NC_020260:3355814:3378046337804633815313486Cronobacter sakazakii Sp291, complete genomehypothetical protein1e-0863.2
NC_004547:442927:4693964693964728843489Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein2e-0862
NC_014311:3076519:309878030987803099577798Ralstonia solanacearum PSI07 chromosome, complete genomesir2 domain4e-0860.8
NC_008322:1186000:1199709119970912011421434Shewanella sp. MR-7, complete genomehypothetical protein6e-0653.5
NC_012560:1677798:168861516886151689499885Azotobacter vinelandii DJ, complete genomehypothetical protein9e-0653.1
NC_021150:1677811:168862816886281689512885Azotobacter vinelandii CA6, complete genomehypothetical protein9e-0653.1