Pre_GI: BLASTP Hits

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Query: NC_013410:155236:159791 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 159791, End: 164329, Length: 4539

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018721:297906:3128993128993174284530Psychroflexus torquis ATCC 700755 chromosome, complete genomeCRISPR-associated protein Cas9/Csn1, subtype II01038
NC_014033:1564733:1570398157039815740123615Prevotella ruminicola 23 chromosome, complete genomeCsn1 family CRISPR-associated protein2e-22109
NC_009952:366959:3917983917983950373240Dinoroseobacter shibae DFL 12, complete genomeCRISPR-associated protein1e-1586.7
NC_017501:1913360:1917073191707319203213249Neisseria meningitidis 8013, complete genomehypothetical protein2e-1482.4
NC_013016:354000:3695473695473727953249Neisseria meningitidis alpha14 chromosome, complete genomeputative CRISPR-associated protein2e-1482.4
NC_016001:1893685:1903821190382119082424422Flavobacterium branchiophilum, complete genomeputative CRISPR-associated (Cas) protein2e-1379.7
NC_010644:254725:2611192611192647063588Elusimicrobium minutum Pei191, complete genomeCRISPR-associated endonuclease Csn1 family protein2e-1172.4
NC_009785:1414892:1426750142675014301603411Streptococcus gordonii str. Challis substr. CH1, complete genomeCRISPR-associated protein, Csn1 family6e-1171.2
NC_015311:2689118:2698142269814227017983657Prevotella denticola F0289 chromosome, complete genomehypothetical protein3e-1068.9
NC_015433:1315363:1323872132387213272403369Streptococcus suis ST3 chromosome, complete genomeCRISPR-associated protein, Csn1 family3e-1068.9