Pre_GI: BLASTP Hits

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Query: NC_013410:1491000:1500184 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1500184, End: 1501020, Length: 837

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014365:2810405:283375928337592834616858Desulfarculus baarsii DSM 2075 chromosome, complete genomeDNA-damage-inducible protein D1e-75283
NC_018866:2484500:248977724897772490613837Dehalobacter sp. DCA chromosome, complete genomeDNA-damage-inducible protein D2e-37156
NC_004337:3590323:378807537880753788899825Shigella flexneri 2a str. 301, complete genomeDNA-damage-inducible protein4e-31135
NC_015311:2059879:207734620773462077690345Prevotella denticola F0289 chromosome, complete genomehypothetical protein6e-31134
NC_014752:1530000:153848515384851539336852Neisseria lactamica ST-640, complete genomeDNA damage inducible protein2e-30132
NC_015873:1193843:121419512141951215028834Megasphaera elsdenii DSM 20460, complete genomehypothetical protein3e-30132
NC_007575:973559:983392983392984237846Sulfurimonas denitrificans DSM 1251, complete genomeDNA-damage-inducible protein D2e-29129
NC_015152:307500:309676309676310530855Spirochaeta sp. Buddy chromosome, complete genomeDNA-damage-inducible protein3e-27122
NC_014251:243700:265211265211265771561Streptococcus pneumoniae TCH8431/19A chromosome, complete genomeDNA-damage-inducible protein4e-23108
NC_011601:1039500:105084810508481051690843Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA-damage-inducible protein3e-22105
NC_018607:135612:153423153423153944522Brachyspira pilosicoli B2904 chromosome, complete genomeDNA-damage-inducible protein D4e-21102
NC_016801:1123733:114556111455611146412852Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeDNA-damage-inducible protein D4e-1685.1
NC_017045:119046:131396131396132220825Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,DNA-damage-inducible protein7e-1581.3
NC_014738:2094000:212614721261472126971825Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,DNA-damage-inducible protein7e-1581.3
NC_007604:743738:758390758390759037648Synechococcus elongatus PCC 7942, complete genomeDNA-damage-inducible protein2e-1480.1
NC_006576:856014:861831861831862478648Synechococcus elongatus PCC 6301, complete genomeDNA-damage-inducible protein2e-1480.1