Pre_GI: BLASTP Hits

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Query: NC_013410:1152188:1189653 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1189653, End: 1191428, Length: 1776

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019897:4131337:4145135414513541474262292Thermobacillus composti KWC4 chromosome, complete genomehypothetical protein3e-1997.1
NC_011745:3511600:3520436352043635238883453Escherichia coli ED1a chromosome, complete genomeputative hydrolase9e-1272.4
NC_009051:165102:1762941762941781201827Methanoculleus marisnigri JR1, complete genomehydrolase (HAD superfamily)-like protein2e-1170.9
NC_010725:5217260:5223824522382452294275604Methylobacterium populi BJ001, complete genomeHaloacid dehalogenase domain protein hydrolase3e-1067.4
NC_012108:3391190:3393345339334533953962052Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein6e-1066.2
NC_018012:121793:1337301337301361382409Thiocystis violascens DSM 198 chromosome, complete genomehypothetical protein2e-0964.7
NC_012781:2608840:2626898262689826289192022Eubacterium rectale ATCC 33656, complete genomehypothetical protein9e-0859.3
NC_014652:1091610:1103539110353911057492211Caldicellulosiruptor hydrothermalis 108 chromosome, completehaloacid dehalogenase domain protein hydrolase3e-0757.4
NC_013410:2519441:2532096253209625338531758Fibrobacter succinogenes subsp. succinogenes S85 chromosome,hydrolase (HAD superfamily)-like protein9e-0755.8
NC_011985:3892630:3902649390264939044571809Agrobacterium radiobacter K84 chromosome 1, complete genomehydrolase (HAD superfamily)2e-0654.7
NC_002163:1354215:1366422136642213695173096Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomeputative sugar transferase2e-0654.7
NC_008609:3672653:3686035368603536882152181Pelobacter propionicus DSM 2379, complete genomehydrolase (HAD superfamily)-like protein6e-0653.1