Pre_GI: BLASTP Hits

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Query: NC_013410:1152188:1153807 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1153807, End: 1155732, Length: 1926

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020291:1045058:1058954105895410602371284Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeglycosyl hydrolases family 393e-118426
NC_013410:2179342:2179342217934221814202079Fibrobacter succinogenes subsp. succinogenes S85 chromosome,glycoside hydrolase family protein8e-45182
NC_013410:2179342:2203100220310022047581659Fibrobacter succinogenes subsp. succinogenes S85 chromosome,carbohydrate binding family 62e-36154
NC_013410:2179342:2205140220514022070111872Fibrobacter succinogenes subsp. succinogenes S85 chromosome,carbohydrate binding family 66e-26119
NC_011832:913994:9326839326839352202538Candidatus Methanosphaerula palustris E1-9c, complete genomeCarbohydrate binding family 69e-24112
NC_015944:353652:3723353723353745032169Haloarcula hispanica ATCC 33960 plasmid pHH400, complete sequencecarbohydrate binding module (family 6) protein6e-2099.8
NC_006395:217139:2184032184032206972295Haloarcula marismortui ATCC 43049 plasmid pNG700, completeputative carbohydrate binding module (family 6) protein5e-1996.7
NC_007645:3870466:3872025387202538738511827Hahella chejuensis KCTC 2396, complete genomeprobable glycosyl hydrolase4e-1893.6
NC_011832:1949717:1953338195333819564453108Candidatus Methanosphaerula palustris E1-9c, complete genomeCarbohydrate binding family 61e-1791.7
NC_013132:6385223:6388702638870263921003399Chitinophaga pinensis DSM 2588, complete genomeCarbohydrate binding family 64e-1583.6
NC_007912:3828980:3828980382898038324833504Saccharophagus degradans 2-40, complete genomehypothetical protein2e-1068.6
NC_013037:5442131:5443929544392954481044176Dyadobacter fermentans DSM 18053, complete genomeCarbohydrate binding family 66e-0963.2
NC_010995:3945339:3952859395285939554892631Cellvibrio japonicus Ueda107, complete genomeglucan exo-1,3-beta glucosidase, putative, glu5A4e-0860.5
NC_009380:2310000:2322850232285023243251476Salinispora tropica CNB-440 chromosome, complete genomeglycerophosphoryl diester phosphodiesterase3e-0654.3