Pre_GI: BLASTP Hits

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Query: NC_012917:569856:583171 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 583171, End: 583341, Length: 171

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012880:3982383:398845039884503988620171Dickeya dadantii Ech703, complete genomeconserved hypothetical protein; putative repressor (interpro)2e-25114
NC_012912:4012112:401806540180654018235171Dickeya zeae Ech1591, complete genomeconserved hypothetical protein; putative repressor (interpro)2e-25114
NC_013956:3641368:364742236474223647709288Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein5e-2096.3
NC_011094:380428:381705381705381839135Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein1e-1168.6
NC_015968:3301958:332432533243253324504180Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein5e-1063.2
NC_012917:1840172:187094118709411871135195Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein2e-0651.2