Pre_GI: BLASTP Hits

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Query: NC_012917:569856:581837 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 581837, End: 582520, Length: 684

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012880:3529017:353426535342653534882618Dickeya dadantii Ech703, complete genomehypothetical protein4e-95347
NC_012912:4012112:401932740193274019611285Dickeya zeae Ech1591, complete genome8e-23107
NC_013421:1819036:183046818304681830800333Pectobacterium wasabiae WPP163, complete genome8e-1684
NC_014500:1066911:108603010860301086200171Dickeya dadantii 3937 chromosome, complete genomehypothetical protein5e-1271.2
NC_009792:859228:872747872747873001255Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein5e-0961.2
NC_014500:3097362:315716931571693157519351Dickeya dadantii 3937 chromosome, complete genomehypothetical protein3e-0652