Pre_GI: BLASTP Hits

Some Help

Query: NC_012917:3684840:3700762 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3700762, End: 3702888, Length: 2127

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:3752619:3770347377034737724972151Pectobacterium wasabiae WPP163, complete genomeAnkyrin01163
NC_012917:3684840:3702900370290037049362037Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeAnkyrin4e-99362
NC_019908:2401577:2404689240468924068572169Brachyspira pilosicoli P43/6/78 chromosome, complete genomeankyrin repeat-containing protein2e-0861.6
NC_010830:1543548:1551922155192215561304209Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein9e-0859.3
NC_010830:1836984:1842930184293018476874758Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-0654.7
NC_003364:1081846:110061511006151101385771Pyrobaculum aerophilum str. IM2, complete genomehypothetical protein with 4 ankyrin repeats5e-0653.5
NC_007759:1028977:1037066103706610383581293Syntrophus aciditrophicus SB, complete genomeankyrin repeat protein8e-0652.8